RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 HSF4Q9ULV5 492 aa14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 POLDIP2Q9Y2S7 368 aa14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 MEX3AA1L020 520 aaKnown RBP14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 FGF8P55075 233 aaPredicted RBP14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 KRTDAPP60985 99 aa14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 OR8B8Q15620 311 aa14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 PLPPR5Q32ZL2 321 aa14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 SLC26A1Q9H2B4 701 aa14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 IGKV1D-42A0A075B6H8 117 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 OPN1MWP04001 364 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 OPN1MW2P0DN77 364 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 OPN1MW3P0DN78 364 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 GALR1P47211 349 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 ZNF658BQ4V348 819 aaPredicted RBP14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 CD74P04233 296 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 SURF2Q15527 256 aaPredicted RBP14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 SLC35G3Q8N808 338 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 ZNF586Q9NXT0 402 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 AQP7P3A6NL99 342 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 KLK10O43240 276 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 RPS11P62280 158 aaKnown RBP eCLIP14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 ZNF808Q8N4W9 903 aaPredicted RBP14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 ADAMTS17Q8TE56 1095 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 RNF133Q8WVZ7 376 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 IL22RA2Q969J5 263 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 PPP1R3CQ9UQK1 317 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 TCF20Q9UGU0 1960 aaKnown RBP14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 A0A1W2PNV4 684 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 PNPP00491 289 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 PTGER4P35408 488 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 CDX1P47902 265 aaPredicted RBP14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 TMEM241Q24JQ0 296 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 LYZL2Q7Z4W2 148 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 SIGLECL1Q8N7X8 197 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 OR10C1Q96KK4 312 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 RAB9BQ9NP90 201 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 PROCRQ9UNN8 238 aa14.29□□□□□ -0.12
CCDC88B-209ENST00000494080 MSGN1A6NI15 193 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 ZNF729A6NN14 1252 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 ADAM20O43506 726 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 SOX15O60248 233 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 CRYAAP02489 173 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 PRF1P14222 555 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 MAGEA5P43359 124 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 SRSF3P84103 164 aaKnown RBP14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 ACOT6Q3I5F7 207 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 SHISA5Q8N114 240 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 VAMP8Q9BV40 100 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 ESRP2Q9H6T0 727 aaKnown RBP14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 PSENENQ9NZ42 101 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 LINC01387J3KSC0 135 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 CTSDP07339 412 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 LIFP15018 202 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 FAM3AP98173 230 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 MPV17LQ2QL34 196 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 LRP11Q86VZ4 500 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 CXorf67Q86X51 503 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 OR10A7Q8NGE5 316 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 WDR54Q9H977 334 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 PITPNC1Q9UKF7 332 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 FNDC1Q4ZHG4 1894 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 RNF212BA8MTL3 300 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 MGST1P10620 155 aaKnown RBP14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 PLGLAQ15195 96 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 OR11L1Q8NGX0 322 aa14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 AKIRIN1Q9H9L7 192 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-209ENST00000494080 MMP16P51512 607 aa14.27□□□□□ -0.12
CCDC88B-209ENST00000494080 NHLH2Q02577 135 aa14.27□□□□□ -0.12
CCDC88B-209ENST00000494080 CYB561D1Q8N8Q1 229 aa14.27□□□□□ -0.12
CCDC88B-209ENST00000494080 EXTL1Q92935 676 aa14.27□□□□□ -0.12
CCDC88B-209ENST00000494080 ADAT3Q96EY9 351 aaPredicted RBP14.27□□□□□ -0.12
CCDC88B-209ENST00000494080 TRAPPC1Q9Y5R8 145 aa14.27□□□□□ -0.12
CCDC88B-209ENST00000494080 CACNA1DQ01668 2161 aa14.27□□□□□ -0.12
CCDC88B-209ENST00000494080 TRBV5-7A0A0A0MS05 114 aa14.27□□□□□ -0.12
CCDC88B-209ENST00000494080 A0A0J9YW62 118 aa14.27□□□□□ -0.12
CCDC88B-209ENST00000494080 MPPED1O15442 326 aa14.27□□□□□ -0.12
CCDC88B-209ENST00000494080 FUT3P21217 361 aa14.27□□□□□ -0.12
CCDC88B-209ENST00000494080 ZNF468Q5VIY5 522 aaPredicted RBP14.27□□□□□ -0.12
CCDC88B-209ENST00000494080 TRAV17A0A0B4J275 112 aa14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 IGKV3-11P04433 115 aa14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 TMEM267Q0VDI3 215 aaPredicted RBP14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 ZNF260Q3ZCT1 412 aa14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 HOGA1Q86XE5 327 aa14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 AQP10Q96PS8 301 aa14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 SIRT7Q9NRC8 400 aa14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 LYZL6O75951 148 aa14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 FBP1P09467 338 aa14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 KLK2P20151 261 aa14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 P2RY1P47900 373 aa14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 FHITP49789 147 aa14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 IGLV3-21P80748 117 aaPredicted RBP14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 EFNB1P98172 346 aa14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 PNRC1Q12796 327 aaPredicted RBP14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 VAMP3Q15836 100 aa14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 ZNF880Q6PDB4 577 aa14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 TUSC5Q8IXB3 177 aa14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 PILRBQ9UKJ0 227 aa14.27□□□□□ -0.13
CCDC88B-209ENST00000494080 TP53BP1Q12888 1972 aaPredicted RBP14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 SPINT2O43291 252 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 GAPDHP04406 335 aaKnown RBP14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 110.8 ms