RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ARL6IP5O75915 188 aa12.05□□□□□ -0.48
USP4-212ENST00000486549 CSN2P05814 226 aa12.05□□□□□ -0.48
USP4-212ENST00000486549 CALRP27797 417 aaKnown RBP12.05□□□□□ -0.48
USP4-212ENST00000486549 SAA4P35542 130 aa12.05□□□□□ -0.48
USP4-212ENST00000486549 SLC9A3R2Q15599 337 aa12.05□□□□□ -0.48
USP4-212ENST00000486549 NHLRC3Q5JS37 347 aa12.05□□□□□ -0.48
USP4-212ENST00000486549 UBE2UQ5VVX9 321 aa12.05□□□□□ -0.48
USP4-212ENST00000486549 SUMF2Q8NBJ7 301 aa12.05□□□□□ -0.48
USP4-212ENST00000486549 NEK7Q8TDX7 302 aa12.05□□□□□ -0.48
USP4-212ENST00000486549 GCDHQ92947 438 aaPredicted RBP12.05□□□□□ -0.48
USP4-212ENST00000486549 FAM46BQ96A09 425 aa12.05□□□□□ -0.48
USP4-212ENST00000486549 FOXRED1Q96CU9 486 aaPredicted RBP12.05□□□□□ -0.48
USP4-212ENST00000486549 DPCDQ9BVM2 203 aaPredicted RBP12.05□□□□□ -0.48
USP4-212ENST00000486549 SELENOIQ9C0D9 397 aa12.05□□□□□ -0.48
USP4-212ENST00000486549 HEXA-AS1Q9H8Q6 139 aa12.05□□□□□ -0.48
USP4-212ENST00000486549 NDUFB11Q9NX14 153 aa12.05□□□□□ -0.48
USP4-212ENST00000486549 AK6Q9Y3D8 172 aaKnown RBP12.05□□□□□ -0.48
USP4-212ENST00000486549 CCRL2O00421 344 aa12.04□□□□□ -0.48
USP4-212ENST00000486549 CLPXO76031 633 aa12.04□□□□□ -0.48
USP4-212ENST00000486549 PAHP00439 452 aa12.04□□□□□ -0.48
USP4-212ENST00000486549 MELTFP08582 738 aa12.04□□□□□ -0.48
USP4-212ENST00000486549 IGHV1-8P0DP01 117 aa12.04□□□□□ -0.48
USP4-212ENST00000486549 MGMTP16455 207 aa12.04□□□□□ -0.48
USP4-212ENST00000486549 GLP1RP43220 463 aa12.04□□□□□ -0.48
USP4-212ENST00000486549 MPV17LQ2QL34 196 aa12.04□□□□□ -0.48
USP4-212ENST00000486549 BRICD5Q6PL45 260 aa12.04□□□□□ -0.48
USP4-212ENST00000486549 Q6YL49 198 aa12.04□□□□□ -0.48
USP4-212ENST00000486549 LINC00596Q86U02 117 aa12.04□□□□□ -0.48
USP4-212ENST00000486549 TMEM104Q8NE00 496 aa12.04□□□□□ -0.48
USP4-212ENST00000486549 PLPPR1Q8TBJ4 325 aa12.04□□□□□ -0.48
USP4-212ENST00000486549 FCGR1BQ92637 280 aa12.04□□□□□ -0.48
USP4-212ENST00000486549 KCNK15Q9H427 330 aa12.04□□□□□ -0.48
USP4-212ENST00000486549 KIF25Q9UIL4 384 aa12.04□□□□□ -0.48
USP4-212ENST00000486549 UBE2J1Q9Y385 318 aaPredicted RBP12.04□□□□□ -0.48
USP4-212ENST00000486549 MEIKINA0A087WXM9 373 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 MPIG6BO95866 241 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 RBP4P02753 201 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 FBP1P09467 338 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 HTR2CP28335 458 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 COMPP49747 757 aaPredicted RBP12.03□□□□□ -0.48
USP4-212ENST00000486549 NEDD8Q15843 81 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 KCTD21Q4G0X4 260 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 C1orf100Q5SVJ3 147 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 PRAMEF5Q5TYX0 476 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 OR10K2Q6IF99 312 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 OR13D1Q8NGV5 346 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 SLC25A28Q96A46 364 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 GFI1Q99684 422 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 BARHL1Q9BZE3 327 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 CST11Q9H112 138 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 GAL3ST2Q9H3Q3 398 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 PRDM13Q9H4Q3 707 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 IFT22Q9H7X7 185 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 PLGRKTQ9HBL7 147 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 SESN1Q9Y6P5 492 aa12.03□□□□□ -0.48
USP4-212ENST00000486549 FAM172BPA6NC97 362 aa12.02□□□□□ -0.49
USP4-212ENST00000486549 MMP23AO75900 390 aa12.02□□□□□ -0.49
USP4-212ENST00000486549 IGHV4-59P01825 116 aa12.02□□□□□ -0.49
USP4-212ENST00000486549 ARG1P05089 322 aa12.02□□□□□ -0.49
USP4-212ENST00000486549 UBBP0CG47 229 aa12.02□□□□□ -0.49
USP4-212ENST00000486549 OMGP23515 440 aa12.02□□□□□ -0.49
USP4-212ENST00000486549 KCNJ3P48549 501 aa12.02□□□□□ -0.49
USP4-212ENST00000486549 LGALS4P56470 323 aa12.02□□□□□ -0.49
USP4-212ENST00000486549 DYNC1I2Q13409 638 aaKnown RBP12.02□□□□□ -0.49
USP4-212ENST00000486549 P2RY14Q15391 338 aa12.02□□□□□ -0.49
USP4-212ENST00000486549 RSBN1Q5VWQ0 802 aaPredicted RBP12.02□□□□□ -0.49
USP4-212ENST00000486549 OR6M1Q8NGM8 313 aa12.02□□□□□ -0.49
USP4-212ENST00000486549 OR13A1Q8NGR1 328 aa12.02□□□□□ -0.49
USP4-212ENST00000486549 C17orf50Q8WW18 174 aa12.02□□□□□ -0.49
USP4-212ENST00000486549 MRPS24Q96EL2 167 aaKnown RBP12.02□□□□□ -0.49
USP4-212ENST00000486549 OR6C3Q9NZP0 311 aa12.02□□□□□ -0.49
USP4-212ENST00000486549 GHRLQ9UBU3 117 aa12.02□□□□□ -0.49
USP4-212ENST00000486549 TRAV39A0A0B4J263 110 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 TRDV1A0A1B0GX56 115 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 TMEM89A2RUT3 159 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 CLDN34H7C241 214 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 SLC22A1O15245 554 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 RNASE1P07998 156 aaKnown RBP12.01□□□□□ -0.49
USP4-212ENST00000486549 VSIG8P0DPA2 414 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 CDK2P24941 298 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 PAX6P26367 422 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 GDNFP39905 211 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 MIDNQ504T8 468 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 C22orf42Q6IC83 251 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 RAB12Q6IQ22 244 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 BAIAP2L2Q6UXY1 529 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 LDLRAD3Q86YD5 345 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 MRGPRDQ8TDS7 321 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 SSMEM1Q8WWF3 244 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 CORO2AQ92828 525 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 Q96M66 194 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 TMEM133Q9H2Q1 129 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 TAS2R3Q9NYW6 316 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 ZNRD1Q9P1U0 126 aa12.01□□□□□ -0.49
USP4-212ENST00000486549 IGHV2-26A0A0B4J1V2 119 aa12□□□□□ -0.49
USP4-212ENST00000486549 TMEM30CPA0ZSE6 113 aa12□□□□□ -0.49
USP4-212ENST00000486549 ZNF729A6NN14 1252 aaPredicted RBP12□□□□□ -0.49
USP4-212ENST00000486549 MCRIP1C9JLW8 97 aa12□□□□□ -0.49
USP4-212ENST00000486549 SLC17A2O00624 439 aa12□□□□□ -0.49
USP4-212ENST00000486549 MYL9P24844 172 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms