RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 ZSCAN26Q16670 478 aa13.04□□□□□ -0.32
COL9A3-208ENST00000469802 RPL22L1Q6P5R6 122 aaKnown RBP13.04□□□□□ -0.32
COL9A3-208ENST00000469802 LYG1Q8N1E2 194 aa13.04□□□□□ -0.32
COL9A3-208ENST00000469802 OR4D6Q8NGJ1 314 aa13.04□□□□□ -0.32
COL9A3-208ENST00000469802 CNIH3Q8TBE1 160 aa13.04□□□□□ -0.32
COL9A3-208ENST00000469802 GPR148Q8TDV2 347 aa13.04□□□□□ -0.32
COL9A3-208ENST00000469802 TNFAIP8L1Q8WVP5 186 aa13.04□□□□□ -0.32
COL9A3-208ENST00000469802 CREB3L1Q96BA8 519 aa13.04□□□□□ -0.32
COL9A3-208ENST00000469802 KIRREL1Q96J84 757 aa13.04□□□□□ -0.32
COL9A3-208ENST00000469802 CITED2Q99967 270 aaPredicted RBP13.04□□□□□ -0.32
COL9A3-208ENST00000469802 BUB1B-PAK6H3BSN5 160 aa13.03□□□□□ -0.32
COL9A3-208ENST00000469802 CD24P25063 80 aa13.03□□□□□ -0.32
COL9A3-208ENST00000469802 BRS3P32247 399 aa13.03□□□□□ -0.32
COL9A3-208ENST00000469802 CEACAM3P40198 252 aa13.03□□□□□ -0.32
COL9A3-208ENST00000469802 SOX2P48431 317 aa13.03□□□□□ -0.32
COL9A3-208ENST00000469802 PAN3Q58A45 887 aaKnown RBP13.03□□□□□ -0.32
COL9A3-208ENST00000469802 TPTE2P1Q5T6R2 138 aa13.03□□□□□ -0.32
COL9A3-208ENST00000469802 OR2G6Q5TZ20 316 aa13.03□□□□□ -0.32
COL9A3-208ENST00000469802 RSBN1Q5VWQ0 802 aaPredicted RBP13.03□□□□□ -0.32
COL9A3-208ENST00000469802 ZNF555Q8NEP9 628 aa13.03□□□□□ -0.32
COL9A3-208ENST00000469802 OR13A1Q8NGR1 328 aa13.03□□□□□ -0.32
COL9A3-208ENST00000469802 TMEM106AQ96A25 262 aa13.03□□□□□ -0.32
COL9A3-208ENST00000469802 OR5M11Q96RB7 305 aa13.03□□□□□ -0.32
COL9A3-208ENST00000469802 MMP28Q9H239 520 aa13.03□□□□□ -0.32
COL9A3-208ENST00000469802 ING3Q9NXR8 418 aa13.03□□□□□ -0.32
COL9A3-208ENST00000469802 IL36GQ9NZH8 169 aa13.03□□□□□ -0.32
COL9A3-208ENST00000469802 KIF25Q9UIL4 384 aa13.03□□□□□ -0.32
COL9A3-208ENST00000469802 SIRT4Q9Y6E7 314 aaPredicted RBP13.03□□□□□ -0.32
COL9A3-208ENST00000469802 OOSP1A8MZH6 123 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 HSPB6O14558 160 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 OR2F2O95006 317 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 AMY1AP04745 511 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 AMY2AP04746 511 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 CD2P06729 351 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 GLP1RP43220 463 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 OR3A4PP47883 348 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 KCNJ3P48549 501 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 ARHGDIBP52566 201 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 EMX1Q04741 257 aaPredicted RBP13.02□□□□□ -0.33
COL9A3-208ENST00000469802 NSUN5P1Q3KNT7 163 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 PIGYQ3MUY2 71 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 NHLRC3Q5JS37 347 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 OR9G1Q8NH87 305 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 PLPPR1Q8TBJ4 325 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 SMIM19Q96E16 107 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 AKR1E2Q96JD6 320 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 RBM14Q96PK6 669 aaKnown RBP13.02□□□□□ -0.33
COL9A3-208ENST00000469802 GPER1Q99527 375 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 SLC25A33Q9BSK2 321 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 IFT22Q9H7X7 185 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 CALYQ9NYX4 217 aa13.02□□□□□ -0.33
COL9A3-208ENST00000469802 DIMT1Q9UNQ2 313 aaKnown RBP13.02□□□□□ -0.33
COL9A3-208ENST00000469802 MEIKINA0A087WXM9 373 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 NPIPB11E5RHQ5 1161 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 MAGEB3O15480 346 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 OGG1O15527 345 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 PEX14O75381 377 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 CLIC3O95833 236 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 LALBAP00709 142 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 IL1AP01583 271 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 CD83Q01151 205 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 RSU1Q15404 277 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 ARSJQ5FYB0 599 aaPredicted RBP13.01□□□□□ -0.33
COL9A3-208ENST00000469802 TMPRSS11AQ6ZMR5 421 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 SATL1Q86VE3 508 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 ZNF485Q8NCK3 441 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 OR4F17Q8NGA8 305 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 OR10K1Q8NGX5 313 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 OR4F4Q96R69 305 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 NR1H4Q96RI1 486 aaPredicted RBP13.01□□□□□ -0.33
COL9A3-208ENST00000469802 FAM192AQ9GZU8 254 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 TMEM138Q9NPI0 162 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 ZNF581Q9P0T4 197 aa13.01□□□□□ -0.33
COL9A3-208ENST00000469802 TRBV5-5A0A0J9YX44 114 aa13□□□□□ -0.33
COL9A3-208ENST00000469802 IRGMA1A4Y4 181 aa13□□□□□ -0.33
COL9A3-208ENST00000469802 H3BUI4 141 aa13□□□□□ -0.33
COL9A3-208ENST00000469802 TOR1AO14656 332 aa13□□□□□ -0.33
COL9A3-208ENST00000469802 CDRT1O95170 752 aa13□□□□□ -0.33
COL9A3-208ENST00000469802 BAG2O95816 211 aa13□□□□□ -0.33
COL9A3-208ENST00000469802 PRRX1P54821 245 aa13□□□□□ -0.33
COL9A3-208ENST00000469802 RBM11P57052 281 aaKnown RBP13□□□□□ -0.33
COL9A3-208ENST00000469802 TCTEX1D4Q5JR98 221 aa13□□□□□ -0.33
COL9A3-208ENST00000469802 CCDC144NLQ6NUI1 221 aa13□□□□□ -0.33
COL9A3-208ENST00000469802 ZNF565Q8N9K5 539 aa13□□□□□ -0.33
COL9A3-208ENST00000469802 OR13C5Q8NGS8 318 aa13□□□□□ -0.33
COL9A3-208ENST00000469802 R3HDM4Q96D70 268 aa13□□□□□ -0.33
COL9A3-208ENST00000469802 BARHL1Q9BZE3 327 aa13□□□□□ -0.33
COL9A3-208ENST00000469802 ZNF281Q9Y2X9 895 aa13□□□□□ -0.33
COL9A3-208ENST00000469802 EXOSC1Q9Y3B2 195 aaKnown RBP13□□□□□ -0.33
COL9A3-208ENST00000469802 A0A1W2PPI3 338 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 FAM90A18PA6NE21 464 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 FAM90A16PA6NEW6 464 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 FAM90A20PA6NIJ5 464 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 FAM90A9PA6NNJ1 464 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 FAM90A12PA8MX19 464 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 FAM90A5PA8MXJ8 464 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 J3QR06 171 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 XPNPEP2O43895 674 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 FAM90A15PP0C7V4 464 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 FAM90A13PP0C7W8 464 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms