RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 COQ2Q96H96 371 aa9.82□□□□□ -0.84
VPS13D-204ENST00000469054 FUNDC2Q9BWH2 189 aa9.82□□□□□ -0.84
VPS13D-204ENST00000469054 TM2D1Q9BX74 207 aa9.82□□□□□ -0.84
VPS13D-204ENST00000469054 BARHL1Q9BZE3 327 aa9.82□□□□□ -0.84
VPS13D-204ENST00000469054 KCNK15Q9H427 330 aa9.82□□□□□ -0.84
VPS13D-204ENST00000469054 METTL8Q9H825 291 aaKnown RBP9.82□□□□□ -0.84
VPS13D-204ENST00000469054 SPACA1Q9HBV2 294 aa9.82□□□□□ -0.84
VPS13D-204ENST00000469054 ING3Q9NXR8 418 aa9.82□□□□□ -0.84
VPS13D-204ENST00000469054 RCC2Q9P258 522 aaKnown RBP9.82□□□□□ -0.84
VPS13D-204ENST00000469054 FBLN5Q9UBX5 448 aa9.82□□□□□ -0.84
VPS13D-204ENST00000469054 WNK2Q9Y3S1 2297 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 TRAV40A0A0B4J280 105 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 hCG_1809904A0A1W2PP81 198 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 A0A1W2PPE2 198 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 A0A1W2PR64 198 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 A0A1W2PRV1 198 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 ODAMA1E959 279 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 SMIM30A4D0T7 59 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 LDLRAD4O15165 306 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 CLEC2LP0C7M8 214 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 IGHV4-38-2P0DP08 117 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 CCL3L1P16619 93 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 PRTN3P24158 256 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 GLIPR1P48060 266 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 LSM3P62310 102 aaKnown RBP9.81□□□□□ -0.84
VPS13D-204ENST00000469054 PAX5Q02548 391 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 MXD1Q05195 221 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 ATXN7L3Q14CW9 347 aaPredicted RBP9.81□□□□□ -0.84
VPS13D-204ENST00000469054 SIGIRRQ6IA17 410 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 BRICD5Q6PL45 260 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 TCF23Q7RTU1 214 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 C11orf42Q8N5U0 333 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 ZNF714Q96N38 554 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 URM1Q9BTM9 101 aaKnown RBP9.81□□□□□ -0.84
VPS13D-204ENST00000469054 NCOR1P1Q9H4R4 102 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 UNKLQ9H9P5 680 aaKnown RBP9.81□□□□□ -0.84
VPS13D-204ENST00000469054 LIN7BQ9HAP6 207 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 SIRT7Q9NRC8 400 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 NUP50Q9UKX7 468 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 PEX16Q9Y5Y5 336 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 LINC00312Q9Y6C7 94 aa9.81□□□□□ -0.84
VPS13D-204ENST00000469054 DOCK11Q5JSL3 2073 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 IGHV3OR16-10A0A075B7F0 116 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 TRGV10A0A0A0MS01 117 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 CENPVL3A0A0U1RRI6 287 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 TMEM272A0A1B0GTI8 110 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 MEX3AA1L020 520 aaKnown RBP9.8□□□□□ -0.84
VPS13D-204ENST00000469054 C17orf98A8MV24 154 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 MCRIP1C9JLW8 97 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 PDCD6O75340 191 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 GLAP06280 429 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 ZNF728P0DKX0 622 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 SLC2A2P11168 524 aaPredicted RBP9.8□□□□□ -0.84
VPS13D-204ENST00000469054 FUT3P21217 361 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 EPHA1P21709 976 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 DLX6P56179 175 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 BPIFB3P59826 476 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 SCGB2A2Q13296 93 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 RBM39Q14498 530 aaKnown RBP9.8□□□□□ -0.84
VPS13D-204ENST00000469054 GPR157Q5UAW9 335 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 RSBN1Q5VWQ0 802 aaPredicted RBP9.8□□□□□ -0.84
VPS13D-204ENST00000469054 SLC35E4Q6ICL7 350 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 RAB12Q6IQ22 244 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 SFXN4Q6P4A7 337 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 GPR141Q7Z602 305 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 TRAPPC6BQ86SZ2 158 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 ANKRD13BQ86YJ7 626 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 FAM89BQ8N5H3 189 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 PLPPR1Q8TBJ4 325 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 NEK7Q8TDX7 302 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 CORO2AQ92828 525 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 TNFRSF14Q92956 283 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 NICN1Q9BSH3 213 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 LPAR5Q9H1C0 372 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 OR6C3Q9NZP0 311 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 RAB22AQ9UL26 194 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 UBE2J1Q9Y385 318 aaPredicted RBP9.8□□□□□ -0.84
VPS13D-204ENST00000469054 ZFHX3Q15911 3703 aa9.8□□□□□ -0.84
VPS13D-204ENST00000469054 MEIKINA0A087WXM9 373 aa9.79□□□□□ -0.84
VPS13D-204ENST00000469054 A0A0A6YYD4 124 aa9.79□□□□□ -0.84
VPS13D-204ENST00000469054 A0A0B4J203 849 aa9.79□□□□□ -0.84
VPS13D-204ENST00000469054 RBP4P02753 201 aa9.79□□□□□ -0.84
VPS13D-204ENST00000469054 FPR2P25090 351 aa9.79□□□□□ -0.84
VPS13D-204ENST00000469054 TGFBR1P36897 503 aa9.79□□□□□ -0.84
VPS13D-204ENST00000469054 RPL5P46777 297 aaKnown RBP9.79□□□□□ -0.84
VPS13D-204ENST00000469054 DLX1P56177 255 aa9.79□□□□□ -0.84
VPS13D-204ENST00000469054 ERVFRD-1P60508 538 aa9.79□□□□□ -0.84
VPS13D-204ENST00000469054 PRB3Q04118 309 aaPredicted RBP9.79□□□□□ -0.84
VPS13D-204ENST00000469054 NKAPLQ5M9Q1 402 aa9.79□□□□□ -0.84
VPS13D-204ENST00000469054 NCR3LG1Q68D85 454 aa9.79□□□□□ -0.84
VPS13D-204ENST00000469054 ZNF565Q8N9K5 539 aa9.79□□□□□ -0.84
VPS13D-204ENST00000469054 LHX4Q969G2 390 aa9.79□□□□□ -0.84
VPS13D-204ENST00000469054 NEDD4LQ96PU5 975 aa9.79□□□□□ -0.84
VPS13D-204ENST00000469054 MS4A7Q9GZW8 240 aaPredicted RBP9.79□□□□□ -0.84
VPS13D-204ENST00000469054 ETAA1Q9NY74 926 aa9.79□□□□□ -0.84
VPS13D-204ENST00000469054 TAS2R3Q9NYW6 316 aa9.79□□□□□ -0.84
VPS13D-204ENST00000469054 ZNF69Q9UC07 566 aa9.79□□□□□ -0.84
VPS13D-204ENST00000469054 DAPK2Q9UIK4 370 aa9.79□□□□□ -0.84
VPS13D-204ENST00000469054 KIF25Q9UIL4 384 aa9.79□□□□□ -0.84
VPS13D-204ENST00000469054 IGHV1-69DA0A0B4J2H0 117 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms