RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 VMA21Q3ZAQ7 101 aa16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 PCM1Q15154 2024 aa16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 TRBV5-7A0A0A0MS05 114 aa16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 TCAPO15273 167 aa16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 PEBP1P30086 187 aaKnown RBP16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 OR1C1Q15619 314 aa16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 SPINK9Q5DT21 86 aa16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 KHDC1LQ5JSQ8 128 aa16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 C19orf48Q6RUI8 117 aa16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 CXorf67Q86X51 503 aaPredicted RBP16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 C11orf42Q8N5U0 333 aa16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 OR10G8Q8NGN5 311 aa16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 HES4Q9HCC6 221 aa16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 MEX3AA1L020 520 aaKnown RBP16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 KCNAB3O43448 404 aa16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 CFDP00746 253 aaPredicted RBP16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 NGFRP08138 427 aa16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 OR11H4Q8NGC9 324 aa16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 LRFN3Q9BTN0 628 aa16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 OR2D2Q9H210 308 aa16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 YBX2Q9Y2T7 364 aaKnown RBP16.71■□□□□ 0.27
CCDC88B-204ENST00000463837 ROM1Q03395 351 aa16.71■□□□□ 0.26
CCDC88B-204ENST00000463837 OR5I1Q13606 314 aa16.71■□□□□ 0.26
CCDC88B-204ENST00000463837 FBXO17Q96EF6 278 aa16.71■□□□□ 0.26
CCDC88B-204ENST00000463837 P4HTMQ9NXG6 502 aa16.71■□□□□ 0.26
CCDC88B-204ENST00000463837 UBR3Q6ZT12 1888 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 OR5H1A6NKK0 313 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 FCGR3BO75015 233 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 OR2A4O95047 310 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 RPS4Y1P22090 263 aaKnown RBP16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 PPP1CAP62136 330 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 LYZL2Q7Z4W2 148 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 H1FOOQ8IZA3 346 aaPredicted RBP16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 PTPMT1Q8WUK0 201 aaPredicted RBP16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 ADAT3Q96EY9 351 aaPredicted RBP16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 OR2A7Q96R45 310 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 C11orf94C9JXX5 98 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 COL9A1P20849 921 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 CA6P23280 308 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 ZNF362Q5T0B9 420 aaPredicted RBP16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 RFESDQ8TAC1 157 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 ZPLD1Q8TCW7 415 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 DEFB108AA8MXU0 73 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 ZNF205O95201 554 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 C1orf100Q5SVJ3 147 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 GAPTQ8N292 157 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 ZBTB34Q8NCN2 500 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 OR10D3Q8NH80 312 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 MEGF10Q96KG7 1140 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 CENPVL1A0A0U1RR11 272 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 GEMIN2O14893 280 aaKnown RBP16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 RFLNBQ8N5W9 214 aa16.7■□□□□ 0.26
CCDC88B-204ENST00000463837 SPCS3P61009 180 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 LINC00518Q8N0U6 118 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 DOCK5Q9H7D0 1870 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 DEDDO75618 318 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 ZNF260Q3ZCT1 412 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 GUSBP11Q6P575 273 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 TM4SF19Q96DZ7 209 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 TEX50A0A1B0GTY4 177 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 NKX2-6A6NCS4 301 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 DXOO77932 396 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 PATE4P0C8F1 98 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 ATP6V0CP27449 155 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 GNB2P62879 340 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 SRSF5Q13243 272 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 COTL1Q14019 142 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 C21orf62-AS1Q17RA5 79 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 DHRS7BQ6IAN0 325 aaPredicted RBP16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 OR1L4Q8NGR5 311 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 ABHD14BQ96IU4 210 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 ADTRPQ96IZ2 230 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 AQP10Q96PS8 301 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 NUDT16L1Q9BRJ7 211 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 GPR132Q9UNW8 380 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 PSG11Q9UQ72 335 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 CA11O75493 328 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 ISG15P05161 165 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 F2RP25116 425 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 EPHA8P29322 1005 aaPredicted RBP16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 Q3ZCU0 254 aa16.69■□□□□ 0.26
CCDC88B-204ENST00000463837 TTRP02766 147 aa16.68■□□□□ 0.26
CCDC88B-204ENST00000463837 BTNL3Q6UXE8 466 aa16.68■□□□□ 0.26
CCDC88B-204ENST00000463837 AMTP48728 403 aa16.68■□□□□ 0.26
CCDC88B-204ENST00000463837 SLC35E3Q7Z769 313 aa16.68■□□□□ 0.26
CCDC88B-204ENST00000463837 CTXND1A0A1B0GTU2 59 aa16.68■□□□□ 0.26
CCDC88B-204ENST00000463837 ALKBH6Q3KRA9 238 aa16.68■□□□□ 0.26
CCDC88B-204ENST00000463837 ZNF766Q5HY98 468 aa16.68■□□□□ 0.26
CCDC88B-204ENST00000463837 OR13G1Q8NGZ3 307 aa16.68■□□□□ 0.26
CCDC88B-204ENST00000463837 CA5BP1Q8WTZ4 195 aa16.68■□□□□ 0.26
CCDC88B-204ENST00000463837 HRKO00198 91 aa16.68■□□□□ 0.26
CCDC88B-204ENST00000463837 DNPH1O43598 174 aa16.68■□□□□ 0.26
CCDC88B-204ENST00000463837 TNFRSF1AP19438 455 aa16.68■□□□□ 0.26
CCDC88B-204ENST00000463837 FAM3BP58499 235 aaPredicted RBP16.68■□□□□ 0.26
CCDC88B-204ENST00000463837 DEFB124Q8NES8 71 aa16.68■□□□□ 0.26
CCDC88B-204ENST00000463837 RAB24Q969Q5 203 aa16.68■□□□□ 0.26
CCDC88B-204ENST00000463837 RPL36A-HNRNPH2H7BZ11 118 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 PGA4P0DJD7 388 aa16.67■□□□□ 0.26
CCDC88B-204ENST00000463837 PGA5P0DJD9 388 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms