RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 FMODQ06828 376 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 ERCC8Q13216 396 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 PNOCQ13519 176 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 PAFAH1B3Q15102 231 aaKnown RBP3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 TAF1AQ15573 450 aaPredicted RBP3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 SLC9A3R2Q15599 337 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 UBE2NLQ5JXB2 153 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 C1orf195Q5TG92 126 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 DNAJC24Q6P3W2 148 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 ZCCHC24Q8N2G6 241 aaKnown RBP3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 MUC15Q8N387 334 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 TBC1D19Q8N5T2 526 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 CLDN22Q8N7P3 220 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 SLC35G3Q8N808 338 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 ZNF680Q8NEM1 530 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 GPR32P1Q8NGA4 272 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 OR6K3Q8NGY3 331 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 ABHD3Q8WU67 409 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 ASB17Q8WXJ9 295 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 RAD51AP1Q96B01 352 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 TM4SF18Q96CE8 201 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 FMC1Q96HJ9 113 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 BTF3L4Q96K17 158 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 TSGA10Q9BZW7 698 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 CHST5Q9GZS9 411 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 VSIRQ9H7M9 311 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 DDX19AQ9NUU7 478 aaKnown RBP3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 GID8Q9NWU2 228 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 ZNF225Q9UK10 706 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 FBXO5Q9UKT4 447 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 WSB1Q9Y6I7 421 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 ZFYVE9O95405 1425 aa3.52□□□□□ -1.85
CCDC88A-206ENST00000430086 ZBED9Q6R2W3 1325 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 MTCL1Q9Y4B5 1905 aaKnown RBP3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 IGKV1-8A0A0C4DH67 115 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 CENPVL3A0A0U1RRI6 287 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 TEX50A0A1B0GTY4 177 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 A0A1B0GXF2 115 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 CD300LBA8K4G0 201 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 H3BP45 60 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 M0R1X1 148 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 DNASE2O00115 360 aaPredicted RBP3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 CCDC22O60826 627 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 SPAG7O75391 227 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 SUPT3HO75486 399 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 ARL6IP5O75915 188 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 OR2B3O76000 313 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 OR4Q2P0C623 313 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 CECR9P0C854 216 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 C1QTNF8P60827 252 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 C1DQ13901 141 aaKnown RBP3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 EDDM3AQ14507 147 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 ZNF235Q14590 738 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 POU6F1Q14863 301 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 RSPO1Q2MKA7 263 aaPredicted RBP3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 Q499Y3 187 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 HIST2H3PS2Q5TEC6 136 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 TSPO2Q5TGU0 170 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 KDM4DQ6B0I6 523 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 IGFL3Q6UXB1 125 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 SCGB1D4Q6XE38 83 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 OLIG3Q7RTU3 272 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 LRRC25Q8N386 305 aaPredicted RBP3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 OR4M2Q8NGB6 313 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 OR1J4Q8NGS1 313 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 NEK7Q8TDX7 302 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 EEF1AKMT1Q8WVE0 214 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 TMBIM1Q969X1 311 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 EBPLQ9BY08 206 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 PARVAQ9NVD7 372 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 DKKL1Q9UK85 242 aa3.51□□□□□ -1.85
CCDC88A-206ENST00000430086 NOTCH2Q04721 2471 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 BRCA1P38398 1863 aaKnown RBP3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 IGHV6-1A0A0B4J1U7 121 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 LOC389332A0A1B0GUA5 103 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 FOXH1O75593 365 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 CNIH1O95406 144 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 IL3P08700 152 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 ELK4P28324 431 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 SPCS3P61009 180 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 GRB2P62993 217 aaKnown RBP3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 DYNLL1P63167 89 aaKnown RBP3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 KRR1Q13601 381 aaKnown RBP3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 BATFQ16520 125 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 TMEM183BQ1AE95 376 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 LRRC75BQ2VPJ9 315 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 TAC4Q86UU9 113 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 TMEM183AQ8IXX5 376 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 OR6V1Q8N148 313 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 ARIH2OSQ8N7S6 290 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 TMEM161BQ8NDZ6 487 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 OR4M1Q8NGD0 313 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 OR2D3Q8NGH3 330 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 ORAOV1Q8WV07 137 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 DYDC1Q8WWB3 177 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 PTX4Q96A99 478 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 LRRC58Q96CX6 371 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 OR4K3Q96R72 315 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 NIPSNAP1Q9BPW8 284 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 ANAPC13Q9BS18 74 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms