RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 FAM106CPP0CH98 169 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 DBTP11182 482 aaKnown RBP11.54□□□□□ -0.56
SDC1-204ENST00000429035 TMEM11P17152 192 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 LMO1P25800 156 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 CCR9P51686 369 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 ZNF691Q5VV52 312 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 C11orf87Q6NUJ2 197 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 FDX2Q6P4F2 183 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 ZNF329Q86UD4 541 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 LHFPL3Q86UP9 236 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 SATL1Q86VE3 508 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 SAXO1Q8IYX7 474 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 WFDC9Q8NEX5 89 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 OR51D1Q8NGF3 324 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 OR13A1Q8NGR1 328 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 OR10K1Q8NGX5 313 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 MRGPRDQ8TDS7 321 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 TRUB1Q8WWH5 349 aaKnown RBP11.54□□□□□ -0.56
SDC1-204ENST00000429035 KIRREL1Q96J84 757 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 INPP5EQ9NRR6 644 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 DHDHQ9UQ10 334 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 KBTBD11-OT1A0A1B0GTJ5 212 aa11.53□□□□□ -0.56
SDC1-204ENST00000429035 WI2-2373I1.2A0A1W2PRP0 233 aa11.53□□□□□ -0.56
SDC1-204ENST00000429035 OOSP1A8MZH6 123 aa11.53□□□□□ -0.56
SDC1-204ENST00000429035 DUS4LO95620 317 aaKnown RBP11.53□□□□□ -0.56
SDC1-204ENST00000429035 MTNR1BP49286 362 aa11.53□□□□□ -0.56
SDC1-204ENST00000429035 ZP1P60852 638 aa11.53□□□□□ -0.56
SDC1-204ENST00000429035 HNF4GQ14541 408 aa11.53□□□□□ -0.56
SDC1-204ENST00000429035 KISS1Q15726 138 aa11.53□□□□□ -0.56
SDC1-204ENST00000429035 MEDAGQ5VYS4 303 aa11.53□□□□□ -0.56
SDC1-204ENST00000429035 DRAM1Q8N682 238 aa11.53□□□□□ -0.56
SDC1-204ENST00000429035 TNFAIP8L1Q8WVP5 186 aa11.53□□□□□ -0.56
SDC1-204ENST00000429035 LGALS12Q96DT0 336 aa11.53□□□□□ -0.56
SDC1-204ENST00000429035 NOL4LQ96MY1 436 aaPredicted RBP11.53□□□□□ -0.56
SDC1-204ENST00000429035 RHOFQ9HBH0 211 aa11.53□□□□□ -0.56
SDC1-204ENST00000429035 PCDHB16Q9NRJ7 776 aa11.53□□□□□ -0.56
SDC1-204ENST00000429035 IDI2-AS1Q9NZ38 188 aa11.53□□□□□ -0.56
SDC1-204ENST00000429035 LINC00527Q9UJ94 153 aa11.53□□□□□ -0.56
SDC1-204ENST00000429035 TRAV39A0A0B4J263 110 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 SERPINE3A8MV23 424 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 E9PQ18 207 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 LY6LH3BQJ8 138 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 J3QRE1 110 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 MAGEB3O15480 346 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 IL1AP01583 271 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 CCDC159P0C7I6 412 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 C21orf33P30042 268 aaPredicted RBP11.52□□□□□ -0.57
SDC1-204ENST00000429035 SSTR5P35346 364 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 SOX2P48431 317 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 RAB25P57735 213 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 KRTAP10-11P60412 298 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 CDK5R1Q15078 307 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 PIGYQ3MUY2 71 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 VAX1Q5SQQ9 334 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 SERPINA12Q8IW75 414 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 LINC00482Q8N8I6 264 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 KLHL30-AS1Q8NEE0 82 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 OR5D14Q8NGL3 314 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 OR10X1Q8NGY0 326 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 OR5AK2Q8NH90 309 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 RFESDQ8TAC1 157 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 CPNE2Q96FN4 548 aaPredicted RBP11.52□□□□□ -0.57
SDC1-204ENST00000429035 PDCD1LG2Q9BQ51 273 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 ISG20L2Q9H9L3 353 aaKnown RBP11.52□□□□□ -0.57
SDC1-204ENST00000429035 GMPPBQ9Y5P6 360 aa11.52□□□□□ -0.57
SDC1-204ENST00000429035 A0A087X0M5 115 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 A0A1B0GX30 115 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 A0A1W2PPE3 182 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 A0A1W2PPI3 338 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 TMEM212A6NML5 194 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 J3QR06 171 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 GABRPO00591 440 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 DYNC1I1O14576 645 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 ATP5HO75947 161 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 HTR3BO95264 441 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 IGKV1D-33P01593 117 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 IGKV1-33P01594 117 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 ALPLP05186 524 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 RAB3AP20336 220 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 SNRPGP62308 76 aaKnown RBP11.51□□□□□ -0.57
SDC1-204ENST00000429035 RPL23AP62750 156 aaKnown RBP11.51□□□□□ -0.57
SDC1-204ENST00000429035 CD69Q07108 199 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 MADCAM1Q13477 382 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 DIAPH2-AS1Q14236 149 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 GALEQ14376 348 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 RSU1Q15404 277 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 ETV3LQ6ZN32 361 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 C18orf65Q6ZTR6 163 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 C8orf86Q6ZUL3 223 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 C5orf56Q8N8D9 126 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 ZNF565Q8N9K5 539 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 OR51T1Q8NGJ9 327 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 CNIH3Q8TBE1 160 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 PLPPR1Q8TBJ4 325 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 MYCBPQ99417 103 aaPredicted RBP11.51□□□□□ -0.57
SDC1-204ENST00000429035 GPR61Q9BZJ8 451 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 AMBNQ9NP70 447 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.51□□□□□ -0.57
SDC1-204ENST00000429035 TAS2R4Q9NYW5 299 aa11.51□□□□□ -0.57
SDC1-204ENST00000429035 EXOGQ9Y2C4 368 aaKnown RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms