RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 GADD45AP24522 165 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 KCNJ11Q14654 390 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 NECTIN1Q15223 517 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 CDNFQ49AH0 187 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF880Q6PDB4 577 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 WDR86Q86TI4 376 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 SBSPONQ8IVN8 264 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 OR2L13Q8N349 312 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 NANOGP1Q8N7R0 232 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF511Q8NB15 262 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 RFESDQ8TAC1 157 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 SH3GL1Q99961 368 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 KRTAP4-12Q9BQ66 201 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 OSBPL8Q9BZF1 889 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 OR2S2Q9NQN1 319 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 PEF1Q9UBV8 284 aaKnown RBP2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 POLR3HQ9Y535 204 aaPredicted RBP2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 ICOSQ9Y6W8 199 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 SCN10AQ9Y5Y9 1956 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 KIAA1671Q9BY89 1806 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 NPIPB8E9PQR5 432 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 LY6LH3BQJ8 138 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 H7C1H1 209 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 M0R1W7 72 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 IGHV3-13P01766 116 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 IGHV3-7P01780 117 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 SBK3P0C264 359 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 EDNRAP25101 427 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 MDH1P40925 334 aaKnown RBP2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 GABRA4P48169 554 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 FHL3Q13643 280 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF141Q15928 474 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 MRPL23Q16540 153 aaKnown RBP2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ZFP69Q49AA0 526 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 LY6G6FQ5SQ64 297 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 SAMD5Q5TGI4 173 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 LCN1P1Q5VSP4 162 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 LEMD1Q68G75 181 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 OR8H3Q8N146 312 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 BVESQ8NE79 360 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ATP6V0E2Q8NHE4 81 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 VSTM2AQ8TAG5 236 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 TPD52L3Q96J77 140 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 NSMCE2Q96MF7 247 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 FEVQ99581 238 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 LRRC1Q9BTT6 524 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 CENPOQ9BU64 300 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 MS4A8Q9BY19 250 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 IMPAD1Q9NX62 359 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ASH1LQ9NR48 2969 aaKnown RBP2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 VWC2LB2RUY7 222 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 MPDU1O75352 247 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 HLA-DPB1P04440 258 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 IL3P08700 152 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF688P0C7X2 276 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 PGAM2P15259 253 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF3P17036 446 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 PRKACAP17612 351 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 LBPP18428 481 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 IGHV1-2P23083 117 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ATP5DP30049 168 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ASPAP45381 313 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 EBPQ15125 230 aaKnown RBP2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 GUK1Q16774 197 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 OR2T12Q8NG77 320 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 TAF15Q92804 592 aaKnown RBP eCLIP2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 MCHR1Q99705 422 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 CHCHD5Q9BSY4 110 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 SYT11Q9BT88 431 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 SCPEP1Q9HB40 452 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 IL1RAPQ9NPH3 570 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 FBXL2Q9UKC9 423 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ADAM30Q9UKF2 790 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 SLC22A13Q9Y226 551 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF98A6NK75 572 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 OOSP1A8MZH6 123 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 MIF4GDA9UHW6 222 aaKnown RBP2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF561-AS1K7EIQ3 104 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 CLN5O75503 358 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 B3GALNT1O75752 331 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ANXA8P13928 327 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 PPIFP30405 207 aaKnown RBP2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 BDKRB2P30411 391 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 OR3A3P47888 321 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 HNRNPFP52597 415 aaKnown RBP2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 DEFB131AP59861 70 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 PKIAP61925 76 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 EFNB3Q15768 340 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 TMEM95Q3KNT9 176 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 EMBQ6PCB8 327 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ANKRD46Q86W74 232 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 DHFR2Q86XF0 187 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 BPIFCQ8NFQ6 507 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 OR51A4Q8NGJ6 313 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 OR51A2Q8NGJ7 313 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 Q8WTZ3 238 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 APH1BQ8WW43 257 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 C12orf43Q96C57 262 aaKnown RBP2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 CEP19Q96LK0 163 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 TMEM56Q96MV1 263 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms