RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 LPCAT4Q643R3 524 aa9.23□□□□□ -0.93
SQSTM1-203ENST00000422245 PXT1Q8NFP0 134 aa9.23□□□□□ -0.93
SQSTM1-203ENST00000422245 OR51T1Q8NGJ9 327 aa9.23□□□□□ -0.93
SQSTM1-203ENST00000422245 OR9G1Q8NH87 305 aa9.23□□□□□ -0.93
SQSTM1-203ENST00000422245 RHOXF1Q8NHV9 184 aa9.23□□□□□ -0.93
SQSTM1-203ENST00000422245 PHF21AQ96BD5 680 aa9.23□□□□□ -0.93
SQSTM1-203ENST00000422245 KIRREL1Q96J84 757 aa9.23□□□□□ -0.93
SQSTM1-203ENST00000422245 RBM14Q96PK6 669 aaKnown RBP9.23□□□□□ -0.93
SQSTM1-203ENST00000422245 PPIL3Q9H2H8 161 aaKnown RBP9.23□□□□□ -0.93
SQSTM1-203ENST00000422245 ISG20L2Q9H9L3 353 aaKnown RBP9.23□□□□□ -0.93
SQSTM1-203ENST00000422245 ING3Q9NXR8 418 aa9.23□□□□□ -0.93
SQSTM1-203ENST00000422245 AASSQ9UDR5 926 aa9.23□□□□□ -0.93
SQSTM1-203ENST00000422245 RPL36Q9Y3U8 105 aaKnown RBP9.23□□□□□ -0.93
SQSTM1-203ENST00000422245 MEIKINA0A087WXM9 373 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 A0A1W2PRX2 142 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 E9PI62 339 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 LY6LH3BQJ8 138 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 HSPB6O14558 160 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 IL1AP01583 271 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 CD2P06729 351 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 LPLP06858 475 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 FAM106CPP0CH98 169 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 CD33P20138 364 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 CD24P25063 80 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 NFYBP25208 207 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 ZSCAN26Q16670 478 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 ABCA11PQ4W5N1 156 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 ZNF529Q6P280 563 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 CENPVQ7Z7K6 275 aaPredicted RBP9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 ZNF565Q8N9K5 539 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 CNIH3Q8TBE1 160 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 MRAPQ8TCY5 172 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 TNFAIP8L1Q8WVP5 186 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 SGCDQ92629 289 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 TOMM40LQ969M1 308 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 RPEQ96AT9 228 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 PDCD1LG2Q9BQ51 273 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 ZNF649Q9BS31 505 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 JAM3Q9BX67 310 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 AMBNQ9NP70 447 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 MRPS18AQ9NVS2 196 aaKnown RBP9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 CALYQ9NYX4 217 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 KIF25Q9UIL4 384 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 MOB4Q9Y3A3 225 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 TSSC4Q9Y5U2 329 aaPredicted RBP9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 HSPE1-MOB4S4R3N1 261 aa9.22□□□□□ -0.93
SQSTM1-203ENST00000422245 TRAV24A0A0B4J272 114 aa9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 TCRBV4S1A1TA0A5B7 111 aa9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 GABRPO00591 440 aa9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 PF4P02776 101 aa9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 C21orf33P30042 268 aaPredicted RBP9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 LOXL3P58215 753 aa9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 RSU1Q15404 277 aa9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 CCDC58Q4VC31 144 aa9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 KLHL22Q53GT1 634 aa9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 TCTEX1D4Q5JR98 221 aa9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 CCDC121Q6ZUS5 278 aa9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 WFDC9Q8NEX5 89 aa9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 OR52I1Q8NGK6 324 aa9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 OR13A1Q8NGR1 328 aa9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 GPR148Q8TDV2 347 aa9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 GPER1Q99527 375 aa9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 BARHL1Q9BZE3 327 aa9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 FAM192AQ9GZU8 254 aa9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 LINC00574Q9H8X3 128 aa9.21□□□□□ -0.94
SQSTM1-203ENST00000422245 LOC100130705A0A1B0GUX0 176 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 CLIC3O95833 236 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 AMY1AP04745 511 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 AMY2AP04746 511 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 LIMS3P0CW19 117 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 LIMS4P0CW20 117 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 CGB3P0DN86 165 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 CGB7P0DN87 165 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 SOX2P48431 317 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 PPP3R1P63098 170 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 SLC35A2P78381 396 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 MADCAM1Q13477 382 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 NHLRC3Q5JS37 347 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 KHDC1LQ5JSQ8 128 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 RSBN1Q5VWQ0 802 aaPredicted RBP9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 RPL22L1Q6P5R6 122 aaKnown RBP9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 THNSL2Q86YJ6 484 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 OSR2Q8N2R0 312 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 PQLC1Q8N2U9 271 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 Q8NFD4 153 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 OR10A7Q8NGE5 316 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 OR51A2Q8NGJ7 313 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 APH1BQ8WW43 257 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 RGP1Q92546 391 aaPredicted RBP9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 MYDGFQ969H8 173 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 NR1H4Q96RI1 486 aaPredicted RBP9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 AURKAIP1Q9NWT8 199 aaPredicted RBP9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 TAS2R4Q9NYW5 299 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 IDI2-AS1Q9NZ38 188 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 IL36GQ9NZH8 169 aa9.2□□□□□ -0.94
SQSTM1-203ENST00000422245 A0A1W2PPI3 338 aa9.19□□□□□ -0.94
SQSTM1-203ENST00000422245 IRGMA1A4Y4 181 aa9.19□□□□□ -0.94
SQSTM1-203ENST00000422245 FAM90A18PA6NE21 464 aa9.19□□□□□ -0.94
SQSTM1-203ENST00000422245 FAM90A16PA6NEW6 464 aa9.19□□□□□ -0.94
SQSTM1-203ENST00000422245 FAM90A20PA6NIJ5 464 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms