RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 OR8H2Q8N162 312 aa15.04■□□□□ -0
SDC1-203ENST00000403076 ST8SIA4Q92187 359 aa15.04■□□□□ -0
SDC1-203ENST00000403076 NEIL1Q96FI4 390 aaPredicted RBP15.04■□□□□ -0
SDC1-203ENST00000403076 SOSTQ9BQB4 213 aa15.04■□□□□ -0
SDC1-203ENST00000403076 SHARPINQ9H0F6 387 aa15.04■□□□□ -0
SDC1-203ENST00000403076 AKIP1Q9NQ31 210 aa15.04■□□□□ -0
SDC1-203ENST00000403076 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.04■□□□□ -0
SDC1-203ENST00000403076 CTSZQ9UBR2 303 aa15.04■□□□□ -0
SDC1-203ENST00000403076 APCP25054 2843 aa15.04■□□□□ -0
SDC1-203ENST00000403076 DVL1O14640 695 aa15.03■□□□□ -0
SDC1-203ENST00000403076 WNT2P09544 360 aa15.03■□□□□ -0
SDC1-203ENST00000403076 SLC25A16P16260 332 aa15.03■□□□□ -0
SDC1-203ENST00000403076 EDDM3BP56851 147 aa15.03■□□□□ -0
SDC1-203ENST00000403076 AESQ08117 197 aa15.03■□□□□ -0
SDC1-203ENST00000403076 ZNF846Q147U1 533 aa15.03■□□□□ -0
SDC1-203ENST00000403076 MFSD4AQ8N468 514 aa15.03■□□□□ -0
SDC1-203ENST00000403076 PLPPR1Q8TBJ4 325 aa15.03■□□□□ -0
SDC1-203ENST00000403076 NUDCD2Q8WVJ2 157 aa15.03■□□□□ -0
SDC1-203ENST00000403076 GCDHQ92947 438 aaPredicted RBP15.03■□□□□ -0
SDC1-203ENST00000403076 FUOMA2VDF0 154 aa15.02■□□□□ -0
SDC1-203ENST00000403076 VWC2LB2RUY7 222 aa15.02■□□□□ -0
SDC1-203ENST00000403076 MELTFP08582 738 aa15.02■□□□□ -0
SDC1-203ENST00000403076 KRBOX4Q5JUW0 171 aa15.02■□□□□ -0
SDC1-203ENST00000403076 DNM1P46Q6ZS02 220 aa15.02■□□□□ -0
SDC1-203ENST00000403076 CLDND2Q8NHS1 167 aa15.02■□□□□ -0
SDC1-203ENST00000403076 H1FXQ92522 213 aaKnown RBP15.02■□□□□ -0
SDC1-203ENST00000403076 WDR12Q9GZL7 423 aaKnown RBP15.02■□□□□ -0
SDC1-203ENST00000403076 CLN8Q9UBY8 286 aa15.02■□□□□ -0
SDC1-203ENST00000403076 SETXQ7Z333 2677 aaKnown RBP15.02□□□□□ -0.01
SDC1-203ENST00000403076 CA11O75493 328 aa15.02□□□□□ -0.01
SDC1-203ENST00000403076 MRPS10P82664 201 aaKnown RBP15.02□□□□□ -0.01
SDC1-203ENST00000403076 GUCA2AQ02747 115 aa15.02□□□□□ -0.01
SDC1-203ENST00000403076 SHEQ5VZ18 495 aa15.02□□□□□ -0.01
SDC1-203ENST00000403076 PRSS57Q6UWY2 283 aa15.02□□□□□ -0.01
SDC1-203ENST00000403076 TPRX1Q8N7U7 411 aa15.02□□□□□ -0.01
SDC1-203ENST00000403076 SETD6Q8TBK2 473 aa15.02□□□□□ -0.01
SDC1-203ENST00000403076 FCAMRQ8WWV6 532 aa15.02□□□□□ -0.01
SDC1-203ENST00000403076 RAB39BQ96DA2 213 aa15.02□□□□□ -0.01
SDC1-203ENST00000403076 HDHD3Q9BSH5 251 aaPredicted RBP15.02□□□□□ -0.01
SDC1-203ENST00000403076 RIMS4Q9H426 269 aaPredicted RBP15.02□□□□□ -0.01
SDC1-203ENST00000403076 TMEM30CPA0ZSE6 113 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 MEIOCA2RUB1 952 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 MEIS3P1A6NDR6 274 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 H7C1Q1 480 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 IGHV2-5P01817 119 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 CSN2P05814 226 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 HEXAP06865 529 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 INHBBP09529 407 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 GLIPR1P48060 266 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 GNB2P62879 340 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 ZNF79Q15937 498 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 ESCO2Q56NI9 601 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 SLC35E4Q6ICL7 350 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 TRAPPC6BQ86SZ2 158 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 FGFRL1Q8N441 504 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 OR4K15Q8NH41 348 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 CCDC107Q8WV48 283 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 COQ2Q96H96 371 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 SCPEP1Q9HB40 452 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 C12orf4Q9NQ89 552 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 KIF25Q9UIL4 384 aa15.01□□□□□ -0.01
SDC1-203ENST00000403076 MEIKINA0A087WXM9 373 aa15□□□□□ -0.01
SDC1-203ENST00000403076 IGHV4-61A0A0C4DH41 118 aa15□□□□□ -0.01
SDC1-203ENST00000403076 NPY4RP50391 375 aa15□□□□□ -0.01
SDC1-203ENST00000403076 DGCR2P98153 550 aa15□□□□□ -0.01
SDC1-203ENST00000403076 RSBN1Q5VWQ0 802 aaPredicted RBP15□□□□□ -0.01
SDC1-203ENST00000403076 WDR25Q64LD2 544 aaPredicted RBP15□□□□□ -0.01
SDC1-203ENST00000403076 ZNF497Q6ZNH5 498 aa15□□□□□ -0.01
SDC1-203ENST00000403076 Q8N402 240 aa15□□□□□ -0.01
SDC1-203ENST00000403076 OR52I2Q8NH67 350 aa15□□□□□ -0.01
SDC1-203ENST00000403076 SRRQ9GZT4 340 aa15□□□□□ -0.01
SDC1-203ENST00000403076 IFT46Q9NQC8 304 aa15□□□□□ -0.01
SDC1-203ENST00000403076 TRAPPC2LQ9UL33 140 aa15□□□□□ -0.01
SDC1-203ENST00000403076 F5H0A9 414 aaPredicted RBP14.99□□□□□ -0.01
SDC1-203ENST00000403076 GABARAPH6UMI1 98 aa14.99□□□□□ -0.01
SDC1-203ENST00000403076 SULT1C2O00338 296 aa14.99□□□□□ -0.01
SDC1-203ENST00000403076 CTDSPLO15194 276 aa14.99□□□□□ -0.01
SDC1-203ENST00000403076 SSX5O60225 188 aa14.99□□□□□ -0.01
SDC1-203ENST00000403076 MT-ND4P03905 459 aa14.99□□□□□ -0.01
SDC1-203ENST00000403076 FCER2P06734 321 aa14.99□□□□□ -0.01
SDC1-203ENST00000403076 LPLP06858 475 aa14.99□□□□□ -0.01
SDC1-203ENST00000403076 USF1P22415 310 aaPredicted RBP14.99□□□□□ -0.01
SDC1-203ENST00000403076 CBX5P45973 191 aa14.99□□□□□ -0.01
SDC1-203ENST00000403076 P2RX3P56373 397 aa14.99□□□□□ -0.01
SDC1-203ENST00000403076 SEC61A1P61619 476 aaKnown RBP14.99□□□□□ -0.01
SDC1-203ENST00000403076 ZNF841Q6ZN19 808 aa14.99□□□□□ -0.01
SDC1-203ENST00000403076 GDPD1Q8N9F7 314 aa14.99□□□□□ -0.01
SDC1-203ENST00000403076 MRPL30Q8TCC3 161 aaKnown RBP14.99□□□□□ -0.01
SDC1-203ENST00000403076 GPX8Q8TED1 209 aa14.99□□□□□ -0.01
SDC1-203ENST00000403076 SMIM4Q8WVI0 70 aa14.99□□□□□ -0.01
SDC1-203ENST00000403076 Q96MF0 132 aa14.99□□□□□ -0.01
SDC1-203ENST00000403076 FOXC2Q99958 501 aa14.99□□□□□ -0.01
SDC1-203ENST00000403076 ST6GALNAC5Q9BVH7 336 aa14.99□□□□□ -0.01
SDC1-203ENST00000403076 SSBP3Q9BWW4 388 aaPredicted RBP14.99□□□□□ -0.01
SDC1-203ENST00000403076 FLNBO75369 2602 aaKnown RBP14.98□□□□□ -0.01
SDC1-203ENST00000403076 GPR37O15354 613 aa14.98□□□□□ -0.01
SDC1-203ENST00000403076 RBBP9O75884 186 aa14.98□□□□□ -0.01
SDC1-203ENST00000403076 ERP29P30040 261 aaKnown RBP14.98□□□□□ -0.01
SDC1-203ENST00000403076 PPP5CP53041 499 aa14.98□□□□□ -0.01
SDC1-203ENST00000403076 LMO4P61968 165 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms