RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 CLDN12P56749 244 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 IL13RA1P78552 427 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 PAX2Q02962 417 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 P2RY14Q15391 338 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 PIGYQ3MUY2 71 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 SIGIRRQ6IA17 410 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 FIP1L1Q6UN15 594 aaKnown RBP7.6□□□□□ -1.19
VPS53-203ENST00000401468 LYPD2Q6UXB3 125 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 C17orf107Q6ZR85 190 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 GAPTQ8N292 157 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 SLC25A38Q96DW6 304 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 NEIL1Q96FI4 390 aaPredicted RBP7.6□□□□□ -1.19
VPS53-203ENST00000401468 MED30Q96HR3 178 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 DMRTB1Q96MA1 342 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 CMTM3Q96MX0 182 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 GAL3ST1Q99999 423 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 NUDT16L1Q9BRJ7 211 aaKnown RBP7.6□□□□□ -1.19
VPS53-203ENST00000401468 SLIRPQ9GZT3 109 aaKnown RBP7.6□□□□□ -1.19
VPS53-203ENST00000401468 NXF2Q9GZY0 626 aaKnown RBP7.6□□□□□ -1.19
VPS53-203ENST00000401468 KCNK15Q9H427 330 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 BATF3Q9NR55 127 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 RAB22AQ9UL26 194 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 ING4Q9UNL4 249 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 ST3GAL6Q9Y274 331 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 SOX21Q9Y651 276 aaPredicted RBP7.6□□□□□ -1.19
VPS53-203ENST00000401468 KIAA2026Q5HYC2 2103 aa7.6□□□□□ -1.19
VPS53-203ENST00000401468 A0A075B6Q4 140 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 A0A0B4J203 849 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 TRAV24A0A0B4J272 114 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 PPIAL4CA0A0B4J2A2 164 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 TMEM82A0PJX8 343 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 SMIM30A4D0T7 59 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 H3BUI4 141 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 SLC33A1O00400 549 aaPredicted RBP7.59□□□□□ -1.19
VPS53-203ENST00000401468 SH2D1BO14796 132 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 GEMIN2O14893 280 aaKnown RBP7.59□□□□□ -1.19
VPS53-203ENST00000401468 TCF21O43680 179 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 PSPNO60542 156 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 NOL3O60936 208 aaKnown RBP7.59□□□□□ -1.19
VPS53-203ENST00000401468 CRTAPO75718 401 aaPredicted RBP7.59□□□□□ -1.19
VPS53-203ENST00000401468 OR2H2O95918 312 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 CHRM2P08172 466 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 ZNF182P17025 639 aaPredicted RBP7.59□□□□□ -1.19
VPS53-203ENST00000401468 ZFP36P26651 326 aaKnown RBP7.59□□□□□ -1.19
VPS53-203ENST00000401468 EFNB2P52799 333 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 COL10A1Q03692 680 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 PLA2G7Q13093 441 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 FAM189A2Q15884 450 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 SLC36A1Q7Z2H8 476 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 OR8H2Q8N162 312 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 BATF2Q8N1L9 274 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 BOLLQ8N9W6 283 aaKnown RBP7.59□□□□□ -1.19
VPS53-203ENST00000401468 DEFB108BQ8NET1 73 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 OR5T2Q8NGG2 359 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 C8orf46Q8TAG6 207 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 LGALS14Q8TCE9 139 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 ACOT12Q8WYK0 555 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 RAB39BQ96DA2 213 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 SNX22Q96L94 193 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 SLC6A7Q99884 636 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 TMEM59Q9BXS4 323 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 SELENOIQ9C0D9 397 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 ABCG5Q9H222 651 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 NCOR1P1Q9H4R4 102 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 BANF2Q9H503 90 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.59□□□□□ -1.19
VPS53-203ENST00000401468 ZNF581Q9P0T4 197 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 HSF4Q9ULV5 492 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 A3GALT2U3KPV4 340 aa7.59□□□□□ -1.19
VPS53-203ENST00000401468 NOTCH1P46531 2555 aa7.59□□□□□ -1.2
VPS53-203ENST00000401468 A0A0A6YYH2 397 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 A0A1B0GW55 424 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 NKX6-3A6NJ46 265 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 A6NJ64 397 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 RAB27BO00194 218 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 DVL1O14640 695 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 TMPRSS2O15393 492 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 ADAM20O43506 726 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 MPIG6BO95866 241 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 PAHP00439 452 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 TK1P04183 234 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 DUX4L2P0CJ85 424 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 DUX4L3P0CJ86 424 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 DUX4L4P0CJ87 422 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 DUX4L5P0CJ88 424 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 DUX4L6P0CJ89 424 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 DUX4L7P0CJ90 424 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 SELLP14151 372 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 RPS2P15880 293 aaKnown RBP7.58□□□□□ -1.2
VPS53-203ENST00000401468 CHATP28329 748 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 ERP29P30040 261 aaKnown RBP7.58□□□□□ -1.2
VPS53-203ENST00000401468 OR3A1P47881 315 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 KCNJ3P48549 501 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 CEBPDP49716 269 aaPredicted RBP7.58□□□□□ -1.2
VPS53-203ENST00000401468 IDNKQ5T6J7 187 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 WDR25Q64LD2 544 aaPredicted RBP7.58□□□□□ -1.2
VPS53-203ENST00000401468 OR10K2Q6IF99 312 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 DUX4L9Q6RFH8 374 aaPredicted RBP7.58□□□□□ -1.2
VPS53-203ENST00000401468 NLRC3Q7RTR2 1065 aa7.58□□□□□ -1.2
VPS53-203ENST00000401468 FAM216BQ8N7L0 139 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms