RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 TDRD6O60522 2096 aaKnown RBP9.95□□□□□ -0.82
TTC28-201ENST00000397906 LSM6P62312 80 aaKnown RBP9.95□□□□□ -0.82
TTC28-201ENST00000397906 CDCP2Q5VXM1 449 aa9.95□□□□□ -0.82
TTC28-201ENST00000397906 NAA60Q9H7X0 242 aa9.95□□□□□ -0.82
TTC28-201ENST00000397906 VSIG4Q9Y279 399 aa9.95□□□□□ -0.82
TTC28-201ENST00000397906 UPK3AO75631 287 aa9.95□□□□□ -0.82
TTC28-201ENST00000397906 TMED3Q9Y3Q3 217 aa9.95□□□□□ -0.82
TTC28-201ENST00000397906 SNRPGP15A8MWD9 76 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 RNASEKQ6P5S7 137 aaKnown RBP9.94□□□□□ -0.82
TTC28-201ENST00000397906 PDPNQ86YL7 162 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 KCNMB1Q16558 191 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 ARFGEF1Q9Y6D6 1849 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 RNF2Q99496 336 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 CYB5R3P00387 301 aaPredicted RBP9.94□□□□□ -0.82
TTC28-201ENST00000397906 IGKV1D-16P01601 117 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 PPP1CCP36873 323 aaKnown RBP9.94□□□□□ -0.82
TTC28-201ENST00000397906 SSMEM1Q8WWF3 244 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 NEURL1O76050 574 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 GFRA1P56159 465 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 BCL2L11O43521 198 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 MRM1Q6IN84 353 aaKnown RBP9.94□□□□□ -0.82
TTC28-201ENST00000397906 SLC45A2Q9UMX9 530 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 SOCS1O15524 211 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 UBE2L3P68036 154 aaKnown RBP9.94□□□□□ -0.82
TTC28-201ENST00000397906 LSM11P83369 360 aaKnown RBP eCLIP9.94□□□□□ -0.82
TTC28-201ENST00000397906 VSTM2AQ8TAG5 236 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 GGNBP1Q5YKI7 109 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 C11orf87Q6NUJ2 197 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 FAM219AQ8IW50 185 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 C9orf170A2RU37 121 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 SNRPCP09234 159 aaKnown RBP9.94□□□□□ -0.82
TTC28-201ENST00000397906 DGAT2L7PQ6IED9 249 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 GAPTQ8N292 157 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 LINC01560Q8TB33 94 aa9.94□□□□□ -0.82
TTC28-201ENST00000397906 KCNAB3O43448 404 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 TMEM88Q6PEY1 159 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 OR1K1Q8NGR3 316 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 F5P12259 2224 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 NHLRC2Q8NBF2 726 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 GPR137Q96N19 417 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 DIRC2Q96SL1 478 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 A0A0J9YW62 118 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 CD40P25942 277 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 CSF2RBP32927 897 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 UCP2P55851 309 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 PERPQ96FX8 193 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 DCAF16Q9NXF7 216 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 BGLAPP02818 100 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 SFTA3P0C7M3 94 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 DYNLT3P51808 116 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 PAFAH1B2P68402 229 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 GLDNQ6ZMI3 551 aaPredicted RBP9.93□□□□□ -0.82
TTC28-201ENST00000397906 ORM1P02763 201 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 DEGS2Q6QHC5 323 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 SRRQ9GZT4 340 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 IL17BQ9UHF5 180 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 CENPVL1A0A0U1RR11 272 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 PLPPR5Q32ZL2 321 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 NUP37Q8NFH4 326 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 ZNF429Q86V71 674 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 OR8I2Q8N0Y5 310 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 CRYBB2P43320 205 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 CAMPP49913 170 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.93□□□□□ -0.82
TTC28-201ENST00000397906 ZNF714Q96N38 554 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 RAB40CQ96S21 281 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 DHRS2Q13268 280 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 RAB32Q13637 225 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 GDF15Q99988 308 aa9.93□□□□□ -0.82
TTC28-201ENST00000397906 RAB5AP20339 215 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 LOC101059948A0A1B0GTJ6 334 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 CGB1A6NKQ9 187 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 SFT2D2O95562 160 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 FAM222BQ8WU58 562 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 CA10Q9NS85 328 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 PRR33A8MZF0 331 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 VDAC1P21796 283 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 POLR2GP62487 172 aaKnown RBP eCLIP9.92□□□□□ -0.82
TTC28-201ENST00000397906 NXF2Q9GZY0 626 aaKnown RBP9.92□□□□□ -0.82
TTC28-201ENST00000397906 ZNF586Q9NXT0 402 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 TRAPPC1Q9Y5R8 145 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 CLDN14O95500 239 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 PGA3P0DJD8 388 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 CEBPDP49716 269 aaPredicted RBP9.92□□□□□ -0.82
TTC28-201ENST00000397906 PF4V1P10720 104 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 C21orf58P58505 322 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 ADTRPQ96IZ2 230 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 CCL28Q9NRJ3 127 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 NEU3Q9UQ49 428 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 WIPI2Q9Y4P8 454 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 KIAA1324LA8MWY0 1029 aaPredicted RBP9.92□□□□□ -0.82
TTC28-201ENST00000397906 RD3LP0DJH9 198 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 HTR1DP28221 377 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 ZNF770Q6IQ21 691 aaPredicted RBP9.92□□□□□ -0.82
TTC28-201ENST00000397906 CXorf58Q96LI9 332 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 ZNFX1Q9P2E3 1918 aaKnown RBP9.92□□□□□ -0.82
TTC28-201ENST00000397906 ZNF737O75373 536 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 PCMT1P22061 227 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 OR10G4Q8NGN3 311 aa9.92□□□□□ -0.82
TTC28-201ENST00000397906 OR10G9Q8NGN4 311 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms