RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 CST11Q9H112 138 aa17.74■□□□□ 0.43
CLN3-207ENST00000395653 NCOR1P1Q9H4R4 102 aa17.74■□□□□ 0.43
CLN3-207ENST00000395653 FAM90A10PA6NDY2 464 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 FAM90A18PA6NE21 464 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 FAM90A16PA6NEW6 464 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 FAM90A20PA6NIJ5 464 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 FAM90A8PA6NJQ4 464 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 FAM90A7PA6NKC0 464 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 FAM90A22PA8MWA6 464 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 FAM90A12PA8MX19 464 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 FAM90A5PA8MXJ8 464 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 FAM90A23PA8MXZ1 464 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 CRTAPO75718 401 aaPredicted RBP17.73■□□□□ 0.43
CLN3-207ENST00000395653 TNFAIP8O95379 198 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 FAM90A15PP0C7V4 464 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 FAM90A13PP0C7W8 464 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 FAM90A14PP0C7W9 464 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 FAM90A24PP0C7X0 464 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 HTR2CP28335 458 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 TMEM104Q8NE00 496 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 OR6M1Q8NGM8 313 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 ZDHHC16Q969W1 377 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 GFI1Q99684 422 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 ZMAT3Q9HA38 289 aaKnown RBP17.73■□□□□ 0.43
CLN3-207ENST00000395653 SPACA1Q9HBV2 294 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 TAS2R3Q9NYW6 316 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 ZNF581Q9P0T4 197 aa17.73■□□□□ 0.43
CLN3-207ENST00000395653 A0A0U1RQK1 487 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 DNAJC9-AS1A6NH13 148 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 CLDN34H7C241 214 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 IGHV1-8P0DP01 117 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 UBA52P62987 128 aaKnown RBP17.72■□□□□ 0.43
CLN3-207ENST00000395653 SYT6Q5T7P8 510 aaPredicted RBP17.72■□□□□ 0.43
CLN3-207ENST00000395653 Q6YL49 198 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 ZNF782Q6ZMW2 699 aaPredicted RBP17.72■□□□□ 0.43
CLN3-207ENST00000395653 Q96M66 194 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 SELENOIQ9C0D9 397 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 GAL3ST2Q9H3Q3 398 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 BANF2Q9H503 90 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 OR6C3Q9NZP0 311 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 RCC2Q9P258 522 aaKnown RBP17.72■□□□□ 0.43
CLN3-207ENST00000395653 AK6Q9Y3D8 172 aaKnown RBP17.72■□□□□ 0.43
CLN3-207ENST00000395653 TRAV1-2A0A0B4J238 106 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 CLPXO76031 633 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 SAA4P35542 130 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 PSMD7P51665 324 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 MIDNQ504T8 468 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 ATAD3CQ5T2N8 411 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 RSBN1Q5VWQ0 802 aaPredicted RBP17.72■□□□□ 0.43
CLN3-207ENST00000395653 PNKDQ8N490 385 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 ING3Q9NXR8 418 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 FAM96BQ9Y3D0 163 aa17.72■□□□□ 0.43
CLN3-207ENST00000395653 A0A1W2PRD5 423 aa17.71■□□□□ 0.43
CLN3-207ENST00000395653 A0A1W2PRF3 423 aa17.71■□□□□ 0.43
CLN3-207ENST00000395653 A0A1W2PRM7 423 aa17.71■□□□□ 0.43
CLN3-207ENST00000395653 MEIOCA2RUB1 952 aa17.71■□□□□ 0.43
CLN3-207ENST00000395653 SLC17A2O00624 439 aa17.71■□□□□ 0.43
CLN3-207ENST00000395653 BPNT1O95861 308 aa17.71■□□□□ 0.43
CLN3-207ENST00000395653 FBP1P09467 338 aa17.71■□□□□ 0.43
CLN3-207ENST00000395653 VSIG8P0DPA2 414 aa17.71■□□□□ 0.43
CLN3-207ENST00000395653 OR13D1Q8NGV5 346 aa17.71■□□□□ 0.43
CLN3-207ENST00000395653 PLPPR1Q8TBJ4 325 aa17.71■□□□□ 0.43
CLN3-207ENST00000395653 FAM216AQ8WUB2 273 aa17.71■□□□□ 0.43
CLN3-207ENST00000395653 FAM46BQ96A09 425 aa17.71■□□□□ 0.43
CLN3-207ENST00000395653 SLC25A28Q96A46 364 aa17.71■□□□□ 0.43
CLN3-207ENST00000395653 C19orf24Q9BVV8 132 aa17.71■□□□□ 0.43
CLN3-207ENST00000395653 PLGRKTQ9HBL7 147 aa17.71■□□□□ 0.43
CLN3-207ENST00000395653 KIF25Q9UIL4 384 aa17.71■□□□□ 0.43
CLN3-207ENST00000395653 SESN1Q9Y6P5 492 aa17.71■□□□□ 0.43
CLN3-207ENST00000395653 H3BUI4 141 aa17.7■□□□□ 0.42
CLN3-207ENST00000395653 MELTFP08582 738 aa17.7■□□□□ 0.42
CLN3-207ENST00000395653 COX7A1P24310 79 aa17.7■□□□□ 0.42
CLN3-207ENST00000395653 MYL9P24844 172 aa17.7■□□□□ 0.42
CLN3-207ENST00000395653 FGF9P31371 208 aaPredicted RBP17.7■□□□□ 0.42
CLN3-207ENST00000395653 RANBP1P43487 201 aa17.7■□□□□ 0.42
CLN3-207ENST00000395653 SLC9A3R2Q15599 337 aa17.7■□□□□ 0.42
CLN3-207ENST00000395653 NEDD8Q15843 81 aa17.7■□□□□ 0.42
CLN3-207ENST00000395653 HEPN1Q6WQI6 88 aa17.7■□□□□ 0.42
CLN3-207ENST00000395653 LDLRAD3Q86YD5 345 aa17.7■□□□□ 0.42
CLN3-207ENST00000395653 ZNF565Q8N9K5 539 aa17.7■□□□□ 0.42
CLN3-207ENST00000395653 KCNG3Q8TAE7 436 aa17.7■□□□□ 0.42
CLN3-207ENST00000395653 STUB1Q9UNE7 303 aa17.7■□□□□ 0.42
CLN3-207ENST00000395653 V9GY05 133 aa17.7■□□□□ 0.42
CLN3-207ENST00000395653 A0A087WXM4 84 aa17.69■□□□□ 0.42
CLN3-207ENST00000395653 MEIKINA0A087WXM9 373 aa17.69■□□□□ 0.42
CLN3-207ENST00000395653 ZNF729A6NN14 1252 aaPredicted RBP17.69■□□□□ 0.42
CLN3-207ENST00000395653 PDCD5O14737 125 aa17.69■□□□□ 0.42
CLN3-207ENST00000395653 HOXA3O43365 443 aaPredicted RBP17.69■□□□□ 0.42
CLN3-207ENST00000395653 MPIG6BO95866 241 aa17.69■□□□□ 0.42
CLN3-207ENST00000395653 QRFPP83859 136 aa17.69■□□□□ 0.42
CLN3-207ENST00000395653 RBM39Q14498 530 aaKnown RBP17.69■□□□□ 0.42
CLN3-207ENST00000395653 C22orf42Q6IC83 251 aa17.69■□□□□ 0.42
CLN3-207ENST00000395653 SLC35E4Q6ICL7 350 aa17.69■□□□□ 0.42
CLN3-207ENST00000395653 TMEM86BQ8N661 226 aa17.69■□□□□ 0.42
CLN3-207ENST00000395653 TSPAN14Q8NG11 270 aa17.69■□□□□ 0.42
CLN3-207ENST00000395653 OR11H6Q8NGC7 330 aa17.69■□□□□ 0.42
CLN3-207ENST00000395653 TMEM59Q9BXS4 323 aa17.69■□□□□ 0.42
CLN3-207ENST00000395653 ZNF696Q9H7X3 374 aa17.69■□□□□ 0.42
CLN3-207ENST00000395653 SHISA3A0PJX4 238 aa17.68■□□□□ 0.42
CLN3-207ENST00000395653 TMEM14DPA8MWL7 114 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms