RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SPACA9Q96E40 222 aaPredicted RBP10.48□□□□□ -0.73
SYNPO-202ENST00000394243 CTXND1A0A1B0GTU2 59 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 BCL2P10415 239 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 PMCHL1Q16048 86 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 ZNF841Q6ZN19 808 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 NT5CQ8TCD5 201 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 OIT3Q8WWZ8 545 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 PPP1R3EQ9H7J1 279 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 KCNE1BA0A087WTH5 132 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 HAND1O96004 215 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 HOXD4P09016 255 aaPredicted RBP10.48□□□□□ -0.73
SYNPO-202ENST00000394243 RPL30P62888 115 aaKnown RBP10.48□□□□□ -0.73
SYNPO-202ENST00000394243 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 DOLPP1Q86YN1 238 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 TMEM30AQ9NV96 361 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 A0A1B0GUL6 1792 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 PQLC2LA1A4F0 135 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 HFEQ30201 348 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 OR1K1Q8NGR3 316 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 OR4C3Q8NH37 302 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 FAM131CQ96AQ9 280 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 ZNF707Q96C28 371 aaPredicted RBP10.47□□□□□ -0.73
SYNPO-202ENST00000394243 WFIKKN1Q96NZ8 548 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 RBM14Q96PK6 669 aaKnown RBP10.47□□□□□ -0.73
SYNPO-202ENST00000394243 OR5AC2Q9NZP5 309 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 TRDCB7Z8K6 153 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 HIST1H1EP10412 219 aaKnown RBP10.47□□□□□ -0.73
SYNPO-202ENST00000394243 KIR2DS2P43631 304 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 MFAP2P55001 183 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 ZNF793Q6ZN11 406 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 H1FOOQ8IZA3 346 aaPredicted RBP10.47□□□□□ -0.73
SYNPO-202ENST00000394243 VN1R2Q8NFZ6 395 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 PHOSPHO2Q8TCD6 241 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 ZNF107Q9UII5 783 aaPredicted RBP10.47□□□□□ -0.73
SYNPO-202ENST00000394243 PITX3O75364 302 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 CTLA4P16410 223 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 ZNF141Q15928 474 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 FFAR1O14842 300 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 SPRY3O43610 288 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 ORM1P02763 201 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 OTX1P32242 354 aaPredicted RBP10.47□□□□□ -0.73
SYNPO-202ENST00000394243 MNX1P50219 401 aaPredicted RBP10.47□□□□□ -0.73
SYNPO-202ENST00000394243 ZNF774Q6NX45 483 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 OR2Z1Q8NG97 314 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 RNF133Q8WVZ7 376 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 IER2Q9BTL4 223 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 SARGQ9BW04 601 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 A0A1W2PN81 502 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 IGLV3-27P01718 113 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 ZNF117Q03924 483 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 C17orf99Q6UX52 265 aa10.47□□□□□ -0.73
SYNPO-202ENST00000394243 SEBOXQ9HB31 216 aaPredicted RBP10.47□□□□□ -0.73
SYNPO-202ENST00000394243 CTAG1AP78358 180 aa10.46□□□□□ -0.73
SYNPO-202ENST00000394243 HES3Q5TGS1 186 aa10.46□□□□□ -0.73
SYNPO-202ENST00000394243 OR8B12Q8NGG6 310 aa10.46□□□□□ -0.73
SYNPO-202ENST00000394243 METTL1Q9UBP6 276 aaKnown RBP10.46□□□□□ -0.73
SYNPO-202ENST00000394243 TRAV8-7A0A075B6U6 113 aa10.46□□□□□ -0.73
SYNPO-202ENST00000394243 ALG1L2C9J202 215 aa10.46□□□□□ -0.73
SYNPO-202ENST00000394243 OR1N2Q8NGR9 330 aa10.46□□□□□ -0.73
SYNPO-202ENST00000394243 SLC25A33Q9BSK2 321 aa10.46□□□□□ -0.73
SYNPO-202ENST00000394243 PLAC1Q9HBJ0 212 aa10.46□□□□□ -0.73
SYNPO-202ENST00000394243 A0A0B4J293 547 aa10.46□□□□□ -0.73
SYNPO-202ENST00000394243 MPLP40238 635 aa10.46□□□□□ -0.73
SYNPO-202ENST00000394243 EFNB2P52799 333 aa10.46□□□□□ -0.73
SYNPO-202ENST00000394243 SUMO3P55854 103 aaPredicted RBP10.46□□□□□ -0.73
SYNPO-202ENST00000394243 DGAT2L7PQ6IED9 249 aa10.46□□□□□ -0.73
SYNPO-202ENST00000394243 MRGPRDQ8TDS7 321 aa10.46□□□□□ -0.73
SYNPO-202ENST00000394243 LINC00615Q96LM1 132 aaPredicted RBP10.46□□□□□ -0.73
SYNPO-202ENST00000394243 SOX21Q9Y651 276 aaPredicted RBP10.46□□□□□ -0.73
SYNPO-202ENST00000394243 GOSR1O95249 250 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 PRSS12P56730 875 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 COL14A1Q05707 1796 aaKnown RBP10.46□□□□□ -0.74
SYNPO-202ENST00000394243 TMEM238LA0A1B0GVL6 79 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 A6NJY4 79 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 C1QL1O75973 258 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 NKX2-2O95096 273 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 PPYP01298 95 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 CD1BP29016 333 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 CLDN18P56856 261 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 RUNX1Q01196 453 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 RELBQ01201 579 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 CST9Q5W186 159 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 MRGPRFQ96AM1 343 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 R3HDM4Q96D70 268 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 CCL28Q9NRJ3 127 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 KIF13AQ9H1H9 1805 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 DICER1Q9UPY3 1922 aaKnown RBP10.46□□□□□ -0.74
SYNPO-202ENST00000394243 NTN1O95631 604 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 TRGC1P0CF51 173 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 FAM53BQ14153 422 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 ATOH7Q8N100 152 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 OR8B3Q8NGG8 313 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 PROCRQ9UNN8 238 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 LTBP3Q9NS15 1303 aa10.46□□□□□ -0.74
SYNPO-202ENST00000394243 RECKO95980 971 aa10.45□□□□□ -0.74
SYNPO-202ENST00000394243 ZGLP1P0C6A0 271 aa10.45□□□□□ -0.74
SYNPO-202ENST00000394243 TMEM50BP56557 158 aa10.45□□□□□ -0.74
SYNPO-202ENST00000394243 OR4D11Q8NGI4 311 aa10.45□□□□□ -0.74
SYNPO-202ENST00000394243 PRRT4C9JH25 899 aa10.45□□□□□ -0.74
SYNPO-202ENST00000394243 M0R296 226 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms