RNA–Protein interactions for RNA: ENST00000381089.7

VCX3A-201, Transcript of variable charge X-linked 3A, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VCX3A, Length 995 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-201ENST00000381089 CALCBP10092 127 aa12.68□□□□□ -0.38
VCX3A-201ENST00000381089 ZNF44P15621 663 aa12.68□□□□□ -0.38
VCX3A-201ENST00000381089 ZNF20P17024 532 aa12.68□□□□□ -0.38
VCX3A-201ENST00000381089 ATP6V1E1P36543 226 aa12.68□□□□□ -0.38
VCX3A-201ENST00000381089 SNRPGP62308 76 aaKnown RBP12.68□□□□□ -0.38
VCX3A-201ENST00000381089 AESQ08117 197 aa12.68□□□□□ -0.38
VCX3A-201ENST00000381089 HES1Q14469 280 aa12.68□□□□□ -0.38
VCX3A-201ENST00000381089 KLHL22Q53GT1 634 aa12.68□□□□□ -0.38
VCX3A-201ENST00000381089 KRBOX4Q5JUW0 171 aa12.68□□□□□ -0.38
VCX3A-201ENST00000381089 C8orf86Q6ZUL3 223 aa12.68□□□□□ -0.38
VCX3A-201ENST00000381089 CHST4Q8NCG5 386 aa12.68□□□□□ -0.38
VCX3A-201ENST00000381089 SETD9Q8NE22 299 aa12.68□□□□□ -0.38
VCX3A-201ENST00000381089 KLHL30-AS1Q8NEE0 82 aa12.68□□□□□ -0.38
VCX3A-201ENST00000381089 OR9G1Q8NH87 305 aa12.68□□□□□ -0.38
VCX3A-201ENST00000381089 CNIH3Q8TBE1 160 aa12.68□□□□□ -0.38
VCX3A-201ENST00000381089 TRUB1Q8WWH5 349 aaKnown RBP12.68□□□□□ -0.38
VCX3A-201ENST00000381089 SPSB1Q96BD6 273 aa12.68□□□□□ -0.38
VCX3A-201ENST00000381089 OR6C3Q9NZP0 311 aa12.68□□□□□ -0.38
VCX3A-201ENST00000381089 A0A087X0M5 115 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 A0A1B0GX30 115 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 A0A1W2PQL4 384 aaPredicted RBP12.67□□□□□ -0.38
VCX3A-201ENST00000381089 ZNF729A6NN14 1252 aaPredicted RBP12.67□□□□□ -0.38
VCX3A-201ENST00000381089 SERPINE3A8MV23 424 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 CSN2P05814 226 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 GABRB1P18505 474 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 NFYBP25208 207 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 HTR1FP30939 366 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 GLIPR1P48060 266 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 HSPA13P48723 471 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 PDZK1IP1Q13113 114 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 TMEM244Q5VVB8 128 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 SSX6Q7RTT6 188 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 FOXRED2Q8IWF2 684 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 C8orf59Q8N0T1 100 aaPredicted RBP12.67□□□□□ -0.38
VCX3A-201ENST00000381089 OR10H4Q8NGA5 316 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 RHOXF1Q8NHV9 184 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 APH1BQ8WW43 257 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 OPALINQ96PE5 141 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 RHOFQ9HBH0 211 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 NEK6Q9HC98 313 aa12.67□□□□□ -0.38
VCX3A-201ENST00000381089 LY6LH3BQJ8 138 aa12.66□□□□□ -0.38
VCX3A-201ENST00000381089 FGF16O43320 207 aa12.66□□□□□ -0.38
VCX3A-201ENST00000381089 MPZL2O60487 215 aa12.66□□□□□ -0.38
VCX3A-201ENST00000381089 SNRNP70P08621 437 aaKnown RBP12.66□□□□□ -0.38
VCX3A-201ENST00000381089 TMEM11P17152 192 aa12.66□□□□□ -0.38
VCX3A-201ENST00000381089 ATF1P18846 271 aa12.66□□□□□ -0.38
VCX3A-201ENST00000381089 RAB25P57735 213 aa12.66□□□□□ -0.38
VCX3A-201ENST00000381089 SCN1BQ07699 218 aa12.66□□□□□ -0.38
VCX3A-201ENST00000381089 SMN1Q16637 294 aaKnown RBP12.66□□□□□ -0.38
VCX3A-201ENST00000381089 UTS2BQ765I0 119 aa12.66□□□□□ -0.38
VCX3A-201ENST00000381089 ZNF695Q8IW36 515 aa12.66□□□□□ -0.38
VCX3A-201ENST00000381089 OR56B4Q8NH76 319 aa12.66□□□□□ -0.38
VCX3A-201ENST00000381089 RFKQ969G6 155 aa12.66□□□□□ -0.38
VCX3A-201ENST00000381089 P2RX4Q99571 388 aa12.66□□□□□ -0.38
VCX3A-201ENST00000381089 ZNF184Q99676 751 aaPredicted RBP12.66□□□□□ -0.38
VCX3A-201ENST00000381089 COMMD4Q9H0A8 199 aa12.66□□□□□ -0.38
VCX3A-201ENST00000381089 AMBNQ9NP70 447 aa12.66□□□□□ -0.38
VCX3A-201ENST00000381089 ING3Q9NXR8 418 aa12.66□□□□□ -0.38
VCX3A-201ENST00000381089 GNG8Q9UK08 70 aa12.66□□□□□ -0.38
VCX3A-201ENST00000381089 FAM90A18PA6NE21 464 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 FAM90A16PA6NEW6 464 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 FAM90A20PA6NIJ5 464 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 FAM90A9PA6NNJ1 464 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 FAM90A12PA8MX19 464 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 FAM90A5PA8MXJ8 464 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 WBP4O75554 376 aaKnown RBP12.65□□□□□ -0.38
VCX3A-201ENST00000381089 KDM4BO94953 1096 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 ZFPL1O95159 310 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 FAM90A15PP0C7V4 464 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 FAM90A13PP0C7W8 464 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 FAM90A14PP0C7W9 464 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 FAM90A24PP0C7X0 464 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 GDNFP39905 211 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 MADCAM1Q13477 382 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 MEDAGQ5VYS4 303 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 SLC35E3Q7Z769 313 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 PRSS35Q8N3Z0 413 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 C5orf56Q8N8D9 126 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 ZNF565Q8N9K5 539 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 RNFT2Q96EX2 444 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 CNBD2Q96M20 576 aa12.65□□□□□ -0.38
VCX3A-201ENST00000381089 NOL4LQ96MY1 436 aaPredicted RBP12.65□□□□□ -0.38
VCX3A-201ENST00000381089 IGKV1-9A0A0C4DH69 117 aa12.64□□□□□ -0.39
VCX3A-201ENST00000381089 KBTBD11-OT1A0A1B0GTJ5 212 aa12.64□□□□□ -0.39
VCX3A-201ENST00000381089 C3orf84H3BNL1 204 aa12.64□□□□□ -0.39
VCX3A-201ENST00000381089 DEGS1O15121 323 aa12.64□□□□□ -0.39
VCX3A-201ENST00000381089 RAB7AP51149 207 aa12.64□□□□□ -0.39
VCX3A-201ENST00000381089 ISL1P61371 349 aa12.64□□□□□ -0.39
VCX3A-201ENST00000381089 ATXN7L3Q14CW9 347 aaPredicted RBP12.64□□□□□ -0.39
VCX3A-201ENST00000381089 SLC25A30Q5SVS4 291 aa12.64□□□□□ -0.39
VCX3A-201ENST00000381089 RDH10Q8IZV5 341 aa12.64□□□□□ -0.39
VCX3A-201ENST00000381089 OR8H3Q8N146 312 aa12.64□□□□□ -0.39
VCX3A-201ENST00000381089 RFT1Q96AA3 541 aa12.64□□□□□ -0.39
VCX3A-201ENST00000381089 FGGYQ96C11 551 aa12.64□□□□□ -0.39
VCX3A-201ENST00000381089 ADAT3Q96EY9 351 aaPredicted RBP12.64□□□□□ -0.39
VCX3A-201ENST00000381089 Q96MT0 163 aa12.64□□□□□ -0.39
VCX3A-201ENST00000381089 GON7Q9BXV9 100 aa12.64□□□□□ -0.39
VCX3A-201ENST00000381089 J3QR06 171 aa12.63□□□□□ -0.39
VCX3A-201ENST00000381089 CCL24O00175 119 aa12.63□□□□□ -0.39
VCX3A-201ENST00000381089 DBTP11182 482 aaKnown RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms