RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 DMBX1Q8NFW5 382 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 PARP12Q9H0J9 701 aaKnown RBP11.42□□□□□ -0.58
CCDC3-202ENST00000378839 HRH4Q9H3N8 390 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 MEMO1Q9Y316 297 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 KLRC4-KLRK1H3BQV0 150 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 ARR3P36575 388 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 PMELP40967 661 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 ERVS71-1P61550 626 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 MEX3BQ6ZN04 569 aaKnown RBP11.42□□□□□ -0.58
CCDC3-202ENST00000378839 TLNRD1Q9H1K6 362 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 KCNIP3Q9Y2W7 256 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 MED12LQ86YW9 2145 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 TRAV24A0A0B4J272 114 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 MPPED1O15442 326 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 TXNL1O43396 289 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 IFNA21P01568 189 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 WT1P19544 449 aaPredicted RBP11.41□□□□□ -0.58
CCDC3-202ENST00000378839 CA6P23280 308 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 HOXA4Q00056 320 aaPredicted RBP11.41□□□□□ -0.58
CCDC3-202ENST00000378839 ZNF766Q5HY98 468 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 SAXO1Q8IYX7 474 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 TMEM9BQ9NQ34 198 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 NIT2Q9NQR4 276 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 PLSCR2Q9NRY7 297 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 RFNGQ9Y644 331 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 NKX2-8O15522 239 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 SPP1P10451 314 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 ASCL1P50553 236 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 ALKBH6Q3KRA9 238 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 UQCC3Q6UW78 93 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 Q6ZS49 121 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 SUMF2Q8NBJ7 301 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 FER1L6-AS2Q96M78 137 aa11.41□□□□□ -0.58
CCDC3-202ENST00000378839 URB1O60287 2271 aaKnown RBP11.41□□□□□ -0.58
CCDC3-202ENST00000378839 IGHV3-64DA0A0J9YX35 117 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 C3orf85A0A1B0GTC6 90 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 NKX2-6A6NCS4 301 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 SLC22A20A6NK97 555 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 HS3ST1O14792 307 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 MUC1P15941 1255 aaPredicted RBP11.4□□□□□ -0.58
CCDC3-202ENST00000378839 NFYBP25208 207 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 NHLH2Q02577 135 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 C10orf91Q5T1B1 145 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 PCSK4Q6UW60 755 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 TBC1D26Q86UD7 250 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 GAPTQ8N292 157 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 OR5A2Q8NGI9 324 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 OR4D5Q8NGN0 318 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 MRPL30Q8TCC3 161 aaKnown RBP11.4□□□□□ -0.58
CCDC3-202ENST00000378839 SUCNR1Q9BXA5 334 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 C11orf1Q9H5F2 150 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 ZDHHC11Q9H8X9 412 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 MMP26Q9NRE1 261 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 GLS2Q9UI32 602 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 RCL1Q9Y2P8 373 aaKnown RBP11.4□□□□□ -0.58
CCDC3-202ENST00000378839 TRGV5A0A0B4J1U4 118 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 TRAV39A0A0B4J263 110 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 A0A1B0GW55 424 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 DUX4L2P0CJ85 424 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 DUX4L3P0CJ86 424 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 DUX4L4P0CJ87 422 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 DUX4L5P0CJ88 424 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 DUX4L6P0CJ89 424 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 DUX4L7P0CJ90 424 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 MEOX2P50222 304 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 SNRPEP62304 92 aaKnown RBP11.4□□□□□ -0.58
CCDC3-202ENST00000378839 FLI1Q01543 452 aaPredicted RBP11.4□□□□□ -0.58
CCDC3-202ENST00000378839 CLN3Q13286 438 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 FBXW9Q5XUX1 488 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 MCEMP1Q8IX19 187 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 DUX4Q9UBX2 424 aa11.4□□□□□ -0.58
CCDC3-202ENST00000378839 FAM90A10PA6NDY2 464 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 FAM90A18PA6NE21 464 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 FAM90A16PA6NEW6 464 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 FAM90A20PA6NIJ5 464 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 FAM90A8PA6NJQ4 464 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 FAM90A7PA6NKC0 464 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 FAM90A22PA8MWA6 464 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 FAM90A12PA8MX19 464 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 FAM90A5PA8MXJ8 464 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 FAM90A23PA8MXZ1 464 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 AGPAT2O15120 278 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 MED6O75586 246 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 FAM90A15PP0C7V4 464 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 FAM90A13PP0C7W8 464 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 FAM90A14PP0C7W9 464 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 FAM90A24PP0C7X0 464 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 TRIP6Q15654 476 aaKnown RBP11.4□□□□□ -0.59
CCDC3-202ENST00000378839 BTNL8Q6UX41 500 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 GCNT2Q8N0V5 402 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 SECTM1Q8WVN6 248 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 RDH5Q92781 318 aa11.4□□□□□ -0.59
CCDC3-202ENST00000378839 TRAPPC2LH3BP13 241 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 TAAR5O14804 337 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 TUSC2O75896 110 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 CD46P15529 392 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 SELEP16581 610 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 GLP1RP43220 463 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 HERV-K104P61576 105 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 ARG2P78540 354 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms