RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 NTF3P20783 257 aa12.15□□□□□ -0.46
COL6A1-201ENST00000361866 CALCRP30988 508 aa12.15□□□□□ -0.46
COL6A1-201ENST00000361866 DSCR4P56555 118 aaPredicted RBP12.15□□□□□ -0.46
COL6A1-201ENST00000361866 TMEM50BP56557 158 aa12.15□□□□□ -0.46
COL6A1-201ENST00000361866 IZUMO4Q1ZYL8 232 aa12.15□□□□□ -0.46
COL6A1-201ENST00000361866 EIF4E3Q8N5X7 224 aaKnown RBP12.15□□□□□ -0.46
COL6A1-201ENST00000361866 UHRF2Q96PU4 802 aa12.15□□□□□ -0.46
COL6A1-201ENST00000361866 RNF126Q9BV68 326 aa12.15□□□□□ -0.46
COL6A1-201ENST00000361866 CACNA1HO95180 2353 aa12.15□□□□□ -0.46
COL6A1-201ENST00000361866 FGF7P21781 194 aa12.15□□□□□ -0.46
COL6A1-201ENST00000361866 GABRA4P48169 554 aa12.15□□□□□ -0.46
COL6A1-201ENST00000361866 RHBDD2Q6NTF9 364 aa12.15□□□□□ -0.46
COL6A1-201ENST00000361866 AP1S3Q96PC3 154 aa12.15□□□□□ -0.46
COL6A1-201ENST00000361866 MSL2Q9HCI7 577 aa12.15□□□□□ -0.46
COL6A1-201ENST00000361866 ZSWIM8A7E2V4 1837 aa12.15□□□□□ -0.47
COL6A1-201ENST00000361866 TIMM8AO60220 97 aaPredicted RBP12.14□□□□□ -0.47
COL6A1-201ENST00000361866 VDAC1P21796 283 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 SNCAP37840 140 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 UBE2V2Q15819 145 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 CLDN23Q96B33 292 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 ACTR3CQ9C0K3 210 aaPredicted RBP12.14□□□□□ -0.47
COL6A1-201ENST00000361866 DUSP15Q9H1R2 295 aaPredicted RBP12.14□□□□□ -0.47
COL6A1-201ENST00000361866 DOK5Q9P104 306 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 GATCO43716 136 aaKnown RBP12.14□□□□□ -0.47
COL6A1-201ENST00000361866 ZNF737O75373 536 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 CELA2AP08217 269 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 CCL3P10147 92 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 MST1P26927 711 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 PRDX4Q13162 271 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 DCAF12Q5T6F0 453 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 RTN4RL2Q86UN3 420 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 TMEM252Q8N6L7 170 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 RSG1Q9BU20 258 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 LHX6Q9UPM6 363 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 G3V3Q6 166 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 ACTL6BO94805 426 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 FCGR3AP08637 254 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 COX5AP20674 150 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 CA6P23280 308 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 TMEM241Q24JQ0 296 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 OR4A4PQ8NGN8 299 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 MESP1Q9BRJ9 268 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 STARD10Q9Y365 291 aa12.14□□□□□ -0.47
COL6A1-201ENST00000361866 AQP7O14520 342 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 TGOLN2O43493 480 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 ZNF735P0CB33 412 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 MYPOPQ86VE0 399 aaPredicted RBP12.13□□□□□ -0.47
COL6A1-201ENST00000361866 ZNF573Q86YE8 665 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 PPP1R35Q8TAP8 253 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 IFI44Q8TCB0 444 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 VWCEQ96DN2 955 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 IER2Q9BTL4 223 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 DEFB127Q9H1M4 99 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 ZDHHC11Q9H8X9 412 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 A0A1B0GTI1 187 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 GAPDHP04406 335 aaKnown RBP12.13□□□□□ -0.47
COL6A1-201ENST00000361866 HEXAP06865 529 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 LSM6P62312 80 aaKnown RBP12.13□□□□□ -0.47
COL6A1-201ENST00000361866 ZNF439Q8NDP4 499 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 OR10D3Q8NH80 312 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 SPSB2Q99619 263 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 CACFD1Q9UGQ2 172 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 WNK2Q9Y3S1 2297 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 SLC25A6P12236 298 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 GALR1P47211 349 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 SLC38A11Q08AI6 406 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 HLA-BQ31612 363 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 PLPPR5Q32ZL2 321 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 KMT5CQ86Y97 462 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 POC1AQ8NBT0 407 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 OR2V1Q8NHB1 315 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 MRGPRFQ96AM1 343 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 SCARF2Q96GP6 870 aaPredicted RBP12.13□□□□□ -0.47
COL6A1-201ENST00000361866 TMEM68Q96MH6 324 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 ZNF665Q9H7R5 613 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 LIN7CQ9NUP9 197 aaKnown RBP12.13□□□□□ -0.47
COL6A1-201ENST00000361866 DEFB108AA8MXU0 73 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 RPP30P78346 268 aaKnown RBP12.13□□□□□ -0.47
COL6A1-201ENST00000361866 ZNF488Q96MN9 340 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 GSN-AS1Q9NRJ2 163 aa12.13□□□□□ -0.47
COL6A1-201ENST00000361866 DBX2Q6ZNG2 339 aa12.12□□□□□ -0.47
COL6A1-201ENST00000361866 SP7Q8TDD2 431 aaPredicted RBP12.12□□□□□ -0.47
COL6A1-201ENST00000361866 IL22RA2Q969J5 263 aa12.12□□□□□ -0.47
COL6A1-201ENST00000361866 HIPK2Q9H2X6 1198 aa12.12□□□□□ -0.47
COL6A1-201ENST00000361866 AQP7P3A6NL99 342 aa12.12□□□□□ -0.47
COL6A1-201ENST00000361866 C5orf67F2Z3F1 127 aa12.12□□□□□ -0.47
COL6A1-201ENST00000361866 OR8U8P0C7N1 319 aa12.12□□□□□ -0.47
COL6A1-201ENST00000361866 CEACAM6P40199 344 aa12.12□□□□□ -0.47
COL6A1-201ENST00000361866 FABP6P51161 128 aa12.12□□□□□ -0.47
COL6A1-201ENST00000361866 SNAI3Q3KNW1 292 aa12.12□□□□□ -0.47
COL6A1-201ENST00000361866 OR10V1Q8NGI7 309 aa12.12□□□□□ -0.47
COL6A1-201ENST00000361866 OR51M1Q9H341 326 aa12.12□□□□□ -0.47
COL6A1-201ENST00000361866 CARHSP1Q9Y2V2 147 aaKnown RBP12.12□□□□□ -0.47
COL6A1-201ENST00000361866 TGIF2-C20orf24A0A0A6YYL0 155 aa12.12□□□□□ -0.47
COL6A1-201ENST00000361866 CBY3A6NI87 242 aa12.12□□□□□ -0.47
COL6A1-201ENST00000361866 H0Y8G0 127 aa12.12□□□□□ -0.47
COL6A1-201ENST00000361866 IL2RAP01589 272 aa12.12□□□□□ -0.47
COL6A1-201ENST00000361866 IGKV3-11P04433 115 aa12.12□□□□□ -0.47
COL6A1-201ENST00000361866 ACAA1P09110 424 aaPredicted RBP12.12□□□□□ -0.47
COL6A1-201ENST00000361866 PGA4P0DJD7 388 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms