RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 MPV17LQ2QL34 196 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 FBXW9Q5XUX1 488 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 MKXQ8IYA7 352 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 PLEKHA2Q9HB19 425 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 TMEM9BQ9NQ34 198 aa13.19□□□□□ -0.3
UPF3B-202ENST00000345865 TRGV5A0A0B4J1U4 118 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 SLC22A20A6NK97 555 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 RHBDL1O75783 438 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 WISP2O76076 250 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 MUC1P15941 1255 aaPredicted RBP13.18□□□□□ -0.3
UPF3B-202ENST00000345865 IL32P24001 234 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 APLNRP35414 380 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 SRSF6Q13247 344 aaKnown RBP13.18□□□□□ -0.3
UPF3B-202ENST00000345865 ZNF169Q14929 603 aaPredicted RBP13.18□□□□□ -0.3
UPF3B-202ENST00000345865 SRSF7Q16629 238 aaKnown RBP eCLIP13.18□□□□□ -0.3
UPF3B-202ENST00000345865 ZNF766Q5HY98 468 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 FBXW12Q6X9E4 464 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 IL34Q6ZMJ4 242 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 TBC1D26Q86UD7 250 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 CCDC71LQ8N9Z2 235 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 OR4D5Q8NGN0 318 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 PARP12Q9H0J9 701 aaKnown RBP13.18□□□□□ -0.3
UPF3B-202ENST00000345865 TMEM222Q9H0R3 208 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 RHOFQ9HBH0 211 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 GP6Q9HCN6 339 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 TTC28Q96AY4 2481 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 NKX2-6A6NCS4 301 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 CELA3BP08861 270 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 CA6P23280 308 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 EIF5AP63241 154 aaKnown RBP13.18□□□□□ -0.3
UPF3B-202ENST00000345865 NHLH2Q02577 135 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 BTNL8Q6UX41 500 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 DPPA2Q7Z7J5 298 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 GAPTQ8N292 157 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 SUMF2Q8NBJ7 301 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 UBAC2Q8NBM4 344 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 NEK7Q8TDX7 302 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 HIST1H2AAQ96QV6 131 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 TREM1Q9NP99 234 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 UQCC1Q9NVA1 299 aa13.18□□□□□ -0.3
UPF3B-202ENST00000345865 RCL1Q9Y2P8 373 aaKnown RBP13.18□□□□□ -0.3
UPF3B-202ENST00000345865 BOD1L1Q8NFC6 3051 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 TRAV24A0A0B4J272 114 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 A0A1W2PR80 420 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 ANKRD30BLA7E2S9 258 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 NUDT19A8MXV4 375 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 F8W036 122 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 HS3ST1O14792 307 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 TUSC2O75896 110 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 TK1P04183 234 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 CAV2P51636 162 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 BLOC1S1P78537 153 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 ARG2P78540 354 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 MRPL30Q8TCC3 161 aaKnown RBP13.17□□□□□ -0.3
UPF3B-202ENST00000345865 RDH5Q92781 318 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 ARV1Q9H2C2 271 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 ZDHHC11Q9H8X9 412 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 FAM86C1Q9NVL1 165 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 TMED3Q9Y3Q3 217 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 ATP23Q9Y6H3 246 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 GLAP06280 429 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 SPIN3Q5JUX0 258 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 EIF5AL1Q6IS14 154 aaKnown RBP13.17□□□□□ -0.3
UPF3B-202ENST00000345865 PCSK4Q6UW60 755 aa13.17□□□□□ -0.3
UPF3B-202ENST00000345865 LILRB1Q8NHL6 650 aaPredicted RBP13.17□□□□□ -0.3
UPF3B-202ENST00000345865 CARHSP1Q9Y2V2 147 aaKnown RBP13.17□□□□□ -0.3
UPF3B-202ENST00000345865 TRDCB7Z8K6 153 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 C9JQL5 133 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 PRSS44E7EML9 344 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 AGPAT2O15120 278 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 ST8SIA3O43173 380 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 TRIP6Q15654 476 aaKnown RBP13.16□□□□□ -0.3
UPF3B-202ENST00000345865 TMEM88Q6PEY1 159 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 SVBPQ8N300 66 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 OR51I2Q9H344 312 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 C11orf1Q9H5F2 150 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 OPA3Q9H6K4 179 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 CCL28Q9NRJ3 127 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 FBXO9Q9UK97 447 aaPredicted RBP13.16□□□□□ -0.3
UPF3B-202ENST00000345865 MPC1Q9Y5U8 109 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 PRR14LQ5THK1 2151 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 HSD17B6O14756 317 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 GPR137BO60478 399 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 GNG3P63215 75 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 IL13RA2Q14627 380 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 Q6ZRG5 221 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 WDR86Q86TI4 376 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 SELENOHQ8IZQ5 122 aaKnown RBP13.16□□□□□ -0.3
UPF3B-202ENST00000345865 TMEM56Q96MV1 263 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 NRIP2Q9BQI9 281 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 TMEM56-RWDD3S4R434 201 aa13.16□□□□□ -0.3
UPF3B-202ENST00000345865 TOR1AO14656 332 aa13.15□□□□□ -0.3
UPF3B-202ENST00000345865 TPD52L2O43399 206 aaKnown RBP13.15□□□□□ -0.3
UPF3B-202ENST00000345865 OR8U9P0C7N5 309 aa13.15□□□□□ -0.3
UPF3B-202ENST00000345865 P2RY1P47900 373 aa13.15□□□□□ -0.3
UPF3B-202ENST00000345865 ASCL1P50553 236 aa13.15□□□□□ -0.3
UPF3B-202ENST00000345865 ZNF573Q86YE8 665 aa13.15□□□□□ -0.3
UPF3B-202ENST00000345865 FAM58AQ8N1B3 248 aa13.15□□□□□ -0.3
UPF3B-202ENST00000345865 SUMF1Q8NBK3 374 aa13.15□□□□□ -0.3
UPF3B-202ENST00000345865 OR8U1Q8NH10 309 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms