RNA–Protein interactions for RNA: ENST00000342494.7

UBE3B-202, Transcript of ubiquitin protein ligase E3B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE3B, Length 5,722 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-202ENST00000342494 PRNDQ9UKY0 176 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 CTSDP07339 412 aaPredicted RBP13.15□□□□□ -0.3
UBE3B-202ENST00000342494 C1orf174Q8IYL3 243 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 TMEM52Q8NDY8 209 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 KCNK15Q9H427 330 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 ASCL3Q9NQ33 180 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 SLC7A10Q9NS82 523 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 NAT8BQ9UHF3 227 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 VSIG4Q9Y279 399 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 COL18A1P39060 1754 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 SMCHD1A6NHR9 2005 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 A0A0J9YW62 118 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 CELA2AP08217 269 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 SLC6A1P30531 599 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.15□□□□□ -0.3
UBE3B-202ENST00000342494 WSB1Q9Y6I7 421 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 SPTA1P02549 2419 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 PRR33A8MZF0 331 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 APELAP0DMC3 54 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 ERVFRD-1P60508 538 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 SPCS3P61009 180 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 FRRS1LQ9P0K9 344 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 DTX4Q9Y2E6 619 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 SPAG17Q6Q759 2223 aa13.15□□□□□ -0.3
UBE3B-202ENST00000342494 RNASEK-C17orf49H0YIS7 233 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 SOCS1O15524 211 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 PMCHP20382 165 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 RPS4Y1P22090 263 aaKnown RBP13.14□□□□□ -0.31
UBE3B-202ENST00000342494 TGIF1Q15583 401 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 SLC23A3Q6PIS1 610 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 PRSS3P2Q8NHM4 247 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 TRAPPC1Q9Y5R8 145 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 TRPM6Q9BX84 2022 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 OR2T8A6NH00 312 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 SYNGR2O43760 224 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 NEURL1O76050 574 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 ARG1P05089 322 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 ZNF658BQ4V348 819 aaPredicted RBP13.14□□□□□ -0.31
UBE3B-202ENST00000342494 TECRQ9NZ01 308 aaKnown RBP13.14□□□□□ -0.31
UBE3B-202ENST00000342494 ZNF737O75373 536 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 CA11O75493 328 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 POLR2GP62487 172 aaKnown RBP eCLIP13.14□□□□□ -0.31
UBE3B-202ENST00000342494 MESP2Q0VG99 397 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 SSX1Q16384 188 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 PLPPR5Q32ZL2 321 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 DMKNQ6E0U4 476 aaPredicted RBP13.14□□□□□ -0.31
UBE3B-202ENST00000342494 ZNF596Q8TC21 504 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 LIPGQ9Y5X9 500 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 AESQ08117 197 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 SLC25A45Q8N413 288 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 DTD1Q8TEA8 209 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 LINC00052Q96N35 136 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 CISD1Q9NZ45 108 aaKnown RBP13.14□□□□□ -0.31
UBE3B-202ENST00000342494 TIAL1Q01085 375 aaKnown RBP eCLIP13.14□□□□□ -0.31
UBE3B-202ENST00000342494 RNASEKQ6P5S7 137 aaKnown RBP13.14□□□□□ -0.31
UBE3B-202ENST00000342494 SAP25Q8TEE9 199 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 NIT2Q9NQR4 276 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 WIPI2Q9Y4P8 454 aa13.14□□□□□ -0.31
UBE3B-202ENST00000342494 FABP4P15090 132 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 NQO2P16083 231 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 HLA-DRB3P79483 266 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 GAPTQ8N292 157 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 RNF133Q8WVZ7 376 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 RNF122Q9H9V4 155 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 PRDM6Q9NQX0 595 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 ATG2BQ96BY7 2078 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 TRAV39A0A0B4J263 110 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 FGF5P12034 268 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 REG1BP48304 166 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 GABRA6Q16445 453 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 TMEM241Q24JQ0 296 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 C19orf35Q6ZS72 473 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 PLAC1Q9HBJ0 212 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 TMEM167BQ9NRX6 74 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 MMP24Q9Y5R2 645 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 ICMTO60725 284 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 UPK3AO75631 287 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 SFTA3P0C7M3 94 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 C9orf172C9J069 976 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 IL24Q13007 206 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 FHL5Q5TD97 284 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 OR4D11Q8NGI4 311 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 NPAS1Q99742 590 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 CCL28Q9NRJ3 127 aa13.13□□□□□ -0.31
UBE3B-202ENST00000342494 SCO1O75880 301 aa13.12□□□□□ -0.31
UBE3B-202ENST00000342494 PIGYQ3MUY2 71 aa13.12□□□□□ -0.31
UBE3B-202ENST00000342494 FAM219AQ8IW50 185 aa13.12□□□□□ -0.31
UBE3B-202ENST00000342494 EPOPA6NHQ4 379 aa13.12□□□□□ -0.31
UBE3B-202ENST00000342494 SYNGR1O43759 233 aa13.12□□□□□ -0.31
UBE3B-202ENST00000342494 PRDX2P32119 198 aa13.12□□□□□ -0.31
UBE3B-202ENST00000342494 C5orf17Q8NAS9 161 aa13.12□□□□□ -0.31
UBE3B-202ENST00000342494 ZCCHC14Q8WYQ9 949 aaKnown RBP13.12□□□□□ -0.31
UBE3B-202ENST00000342494 PPYP01298 95 aa13.12□□□□□ -0.31
UBE3B-202ENST00000342494 COL10A1Q03692 680 aa13.12□□□□□ -0.31
UBE3B-202ENST00000342494 SURF2Q15527 256 aaPredicted RBP13.12□□□□□ -0.31
UBE3B-202ENST00000342494 LINC00596Q86U02 117 aa13.12□□□□□ -0.31
UBE3B-202ENST00000342494 P2RX4Q99571 388 aa13.12□□□□□ -0.31
UBE3B-202ENST00000342494 OGG1O15527 345 aa13.12□□□□□ -0.31
UBE3B-202ENST00000342494 ALX3O95076 343 aa13.12□□□□□ -0.31
UBE3B-202ENST00000342494 MPC2O95563 127 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms