RNA–Protein interactions for RNA: ENST00000339037.3

LINC01116-202, Transcript of long intergenic non-protein coding RNA 1116, humanhuman

TSL 3 BASIC

Gene LINC01116, Length 838 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01116-202ENST00000339037 PELI1Q96FA3 418 aa12.4□□□□□ -0.42
LINC01116-202ENST00000339037 OPALINQ96PE5 141 aa12.4□□□□□ -0.42
LINC01116-202ENST00000339037 MCRIP2Q9BUT9 160 aaKnown RBP12.4□□□□□ -0.42
LINC01116-202ENST00000339037 MOB4Q9Y3A3 225 aa12.4□□□□□ -0.42
LINC01116-202ENST00000339037 HSPE1-MOB4S4R3N1 261 aa12.4□□□□□ -0.42
LINC01116-202ENST00000339037 A0A087X0M5 115 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 A0A1B0GX30 115 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 LY6LH3BQJ8 138 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 J3QLW9 94 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 CSN2P05814 226 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 CCDC159P0C7I6 412 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 ZNF44P15621 663 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 ZNF19P17023 458 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 GABRB1P18505 474 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 ATF1P18846 271 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 LMO1P25800 156 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 RPL23AP62750 156 aaKnown RBP12.39□□□□□ -0.43
LINC01116-202ENST00000339037 SCN1BQ07699 218 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 KRBOX4Q5JUW0 171 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 ZFP1Q6P2D0 407 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 KCTD20Q7Z5Y7 419 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 RFT1Q96AA3 541 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 RPEQ96AT9 228 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 C4orf36Q96KX1 117 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 SPACA5Q96QH8 159 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 COMMD4Q9H0A8 199 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 PCDHB16Q9NRJ7 776 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 ING3Q9NXR8 418 aa12.39□□□□□ -0.43
LINC01116-202ENST00000339037 EXOGQ9Y2C4 368 aaKnown RBP12.39□□□□□ -0.43
LINC01116-202ENST00000339037 IGKV1-12A0A0C4DH73 117 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 OR4C45A6NMZ5 311 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 KDM4BO94953 1096 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 IGKV1D-12P01611 117 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 NFYBP25208 207 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 SLC6A1P30531 599 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 THBS3P49746 956 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 CCR9P51686 369 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 ATXN7L3Q14CW9 347 aaPredicted RBP12.38□□□□□ -0.43
LINC01116-202ENST00000339037 OR2W3Q7Z3T1 314 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 ACBD7Q8N6N7 88 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 CHST4Q8NCG5 386 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 OR5D18Q8NGL1 313 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 OR13C3Q8NGS6 347 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 OR13C9Q8NGT0 318 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 OR56B4Q8NH76 319 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 TOMM40LQ969M1 308 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 COQ2Q96H96 371 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 ALG8Q9BVK2 526 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 OR6C3Q9NZP0 311 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 MYRFQ9Y2G1 1151 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 GMPPBQ9Y5P6 360 aa12.38□□□□□ -0.43
LINC01116-202ENST00000339037 ZNF729A6NN14 1252 aaPredicted RBP12.37□□□□□ -0.43
LINC01116-202ENST00000339037 NUDT19A8MXV4 375 aa12.37□□□□□ -0.43
LINC01116-202ENST00000339037 GHRHP01286 108 aa12.37□□□□□ -0.43
LINC01116-202ENST00000339037 DBTP11182 482 aaKnown RBP12.37□□□□□ -0.43
LINC01116-202ENST00000339037 ALKBH1Q13686 389 aaKnown RBP12.37□□□□□ -0.43
LINC01116-202ENST00000339037 UTF1Q5T230 341 aa12.37□□□□□ -0.43
LINC01116-202ENST00000339037 C8orf86Q6ZUL3 223 aa12.37□□□□□ -0.43
LINC01116-202ENST00000339037 LHFPL3Q86UP9 236 aa12.37□□□□□ -0.43
LINC01116-202ENST00000339037 THNSL2Q86YJ6 484 aa12.37□□□□□ -0.43
LINC01116-202ENST00000339037 OR9G1Q8NH87 305 aa12.37□□□□□ -0.43
LINC01116-202ENST00000339037 CHPT1Q8WUD6 406 aa12.37□□□□□ -0.43
LINC01116-202ENST00000339037 KIRREL1Q96J84 757 aa12.37□□□□□ -0.43
LINC01116-202ENST00000339037 NOL4LQ96MY1 436 aaPredicted RBP12.37□□□□□ -0.43
LINC01116-202ENST00000339037 SLC29A1Q99808 456 aa12.37□□□□□ -0.43
LINC01116-202ENST00000339037 ISG20L2Q9H9L3 353 aaKnown RBP12.37□□□□□ -0.43
LINC01116-202ENST00000339037 RHOFQ9HBH0 211 aa12.37□□□□□ -0.43
LINC01116-202ENST00000339037 NEK6Q9HC98 313 aa12.37□□□□□ -0.43
LINC01116-202ENST00000339037 AMBNQ9NP70 447 aa12.37□□□□□ -0.43
LINC01116-202ENST00000339037 ZMAT5Q9UDW3 170 aaKnown RBP12.37□□□□□ -0.43
LINC01116-202ENST00000339037 AMMECR1Q9Y4X0 333 aaPredicted RBP12.37□□□□□ -0.43
LINC01116-202ENST00000339037 KBTBD11-OT1A0A1B0GTJ5 212 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 TMEM238LA0A1B0GVL6 79 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 FAM90A18PA6NE21 464 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 FAM90A16PA6NEW6 464 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 FAM90A20PA6NIJ5 464 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 FAM90A9PA6NNJ1 464 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 FAM90A12PA8MX19 464 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 FAM90A5PA8MXJ8 464 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 SLC33A1O00400 549 aaPredicted RBP12.36□□□□□ -0.43
LINC01116-202ENST00000339037 SNRNP70P08621 437 aaKnown RBP12.36□□□□□ -0.43
LINC01116-202ENST00000339037 FAM90A15PP0C7V4 464 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 FAM90A13PP0C7W8 464 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 FAM90A14PP0C7W9 464 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 FAM90A24PP0C7X0 464 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 GLP1RP43220 463 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 GALEQ14376 348 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 HES1Q14469 280 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 C17orf58Q2M2W7 97 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 UNQ9370/PRO34162Q6UXP9 181 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 C5orf56Q8N8D9 126 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 KLHL30-AS1Q8NEE0 82 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 PPIL3Q9H2H8 161 aaKnown RBP12.36□□□□□ -0.43
LINC01116-202ENST00000339037 ZFP57Q9NU63 452 aa12.36□□□□□ -0.43
LINC01116-202ENST00000339037 SNTNA6NMZ2 147 aa12.35□□□□□ -0.43
LINC01116-202ENST00000339037 SERPINE3A8MV23 424 aa12.35□□□□□ -0.43
LINC01116-202ENST00000339037 E9PI62 339 aa12.35□□□□□ -0.43
LINC01116-202ENST00000339037 DEGS1O15121 323 aa12.35□□□□□ -0.43
LINC01116-202ENST00000339037 MT-ND2P03891 347 aa12.35□□□□□ -0.43
LINC01116-202ENST00000339037 TMEM11P17152 192 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms