RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 DKKL1Q9UK85 242 aa11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 THADAQ6YHU6 1953 aa11.65□□□□□ -0.54
CCDC88C-201ENST00000331194 DFFBO76075 338 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 FBXW4P57775 412 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 MRPS11P82912 194 aaKnown RBP11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 H3F3AP84243 136 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 NSDHLQ15738 373 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 PCGF1Q9BSM1 259 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 PLEKHF2Q9H8W4 249 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 A0A1W2PR80 420 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 TDGF1P3P51864 188 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 VAMP2P63027 116 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 IZUMO4Q1ZYL8 232 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 SAPCD1Q5SSQ6 148 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 C1orf189Q5VU69 101 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 RTL10Q7L3V2 364 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 C16orf82Q7Z2V1 217 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 FAM185AQ8N0U4 392 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 CPEB3Q8NE35 698 aaKnown RBP11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 Q96M66 194 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 TM2D1Q9BX74 207 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 MRPL13Q9BYD1 178 aaKnown RBP11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 RPRMQ9NS64 109 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 WNT16Q9UBV4 365 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 ATG2AQ2TAZ0 1938 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 TRBV24-1A0A075B6N3 115 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 IGHV5-51A0A0C4DH38 117 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 TMEM150CB9EJG8 249 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 M0R143 59 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 HMGB3O15347 200 aaKnown RBP11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 CHST1O43916 411 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 SCGB1D1O95968 90 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 HOXB2P14652 356 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 HNRNPA2B1P22626 353 aaKnown RBP11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 MTCP1P56278 107 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 DCAF7P61962 342 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 MRPS34P82930 218 aaKnown RBP11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 LRTM2Q8N967 370 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 FUT9Q9Y231 359 aa11.64□□□□□ -0.55
CCDC88C-201ENST00000331194 ASPMQ8IZT6 3477 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 CEBPZOSA8MTT3 80 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 OR2J2O76002 312 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 FGF5P12034 268 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 ECI1P42126 302 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 TLE4Q04727 773 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 SPIN3Q5JUX0 258 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 UEVLDQ8IX04 471 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 OR2AE1Q8NHA4 323 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 DNASE2BQ8WZ79 361 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 ADGRG7Q96K78 797 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 LYRM2Q9NU23 88 aaPredicted RBP11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 TCFL5Q9UL49 500 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 C3orf85A0A1B0GTC6 90 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 TCF21O43680 179 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 CA11O75493 328 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 TMEM267Q0VDI3 215 aaPredicted RBP11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 ZP4Q12836 540 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 MYBPHQ13203 477 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 HERPUD1Q15011 391 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 ZNF726P1Q15940 193 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 OR51B6Q9H340 312 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 ZNF160Q9HCG1 818 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 SEMA5BQ9P283 1151 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 ESPL1Q14674 2120 aa11.63□□□□□ -0.55
CCDC88C-201ENST00000331194 A0A1W2PPQ1 181 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 ZNF732B4DXR9 585 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 TK1P04183 234 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 TMEM11P17152 192 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 IDH3GP51553 393 aaPredicted RBP11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 ARL6IP1Q15041 203 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 RAB35Q15286 201 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 FAM189A2Q15884 450 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 ARSJQ5FYB0 599 aaPredicted RBP11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 SLC25A24Q6NUK1 477 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 SLC16A14Q7RTX9 510 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 ZNF100Q8IYN0 542 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 NOXO1Q8NFA2 376 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 ZNF576Q9H609 170 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 UBE2J1Q9Y385 318 aaPredicted RBP11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 SDK2Q58EX2 2172 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 LIPT2A6NK58 231 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 B4DEV8 164 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 TNFP01375 233 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 MSX1P28360 303 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 NTSR1P30989 418 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 ZNF705AQ6ZN79 300 aaPredicted RBP11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 CALHM1Q8IU99 346 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 ZNF695Q8IW36 515 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 DEFB119Q8N690 84 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 OR5T1Q8NG75 326 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 RBMXL1Q96E39 390 aaKnown RBP11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 SRD5A3Q9H8P0 318 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 IGKV1-27A0A075B6S5 117 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 A0A1W2PQD3 144 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 MPPED1O15442 326 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 OPN1MWP04001 364 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 PFN1P07737 140 aaKnown RBP11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 OPN1MW2P0DN77 364 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 OPN1MW3P0DN78 364 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 CCL1P22362 96 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms