RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 RELQ04864 619 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-201ENST00000303395 SLC9A3R2Q15599 337 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 ZNF528Q3MIS6 628 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 FAM57BQ71RH2 274 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 MUC20Q8N307 709 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-201ENST00000303395 OR52N4Q8NGI2 321 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 RNF133Q8WVZ7 376 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 TEX37Q96LM6 180 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 C20orf24Q9BUV8 137 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 MAP1LC3CQ9BXW4 147 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 GP6Q9HCN6 339 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 ARID2Q68CP9 1835 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 OR4C45A6NMZ5 311 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 F8VVB4 439 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 F8VWA3 439 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 GCM2O75603 506 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-201ENST00000303395 TNFSF15O95150 251 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 CA3P07451 260 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 C1SP09871 688 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 ZNF865P0CJ78 1059 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-201ENST00000303395 MC5RP33032 325 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 TRA2AQ13595 282 aaKnown RBP eCLIP4.67□□□□□ -1.66
SCN1A-201ENST00000303395 ZNF506Q5JVG8 444 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 MARCH8Q5T0T0 291 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 SPNS3Q6ZMD2 512 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 OR52E1Q8NGJ3 308 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 OR13G1Q8NGZ3 307 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 SH3BGRL3Q9H299 93 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 AKIRIN1Q9H9L7 192 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-201ENST00000303395 SAP30LQ9HAJ7 183 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 ZFP64Q9NPA5 681 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 NBASA2RRP1 2371 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 TRBV5-7A0A0A0MS05 114 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 A0A1B0GTI1 187 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 ZC3H12DA2A288 527 aaKnown RBP4.67□□□□□ -1.66
SCN1A-201ENST00000303395 C19orf67A6NJJ6 358 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 EFSO43281 561 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 EIF4EBP2Q13542 120 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-201ENST00000303395 AWAT1Q58HT5 328 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 BAHD1Q8TBE0 780 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-201ENST00000303395 CA5BP1Q8WTZ4 195 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 PERPQ96FX8 193 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 CLEC2DQ9UHP7 191 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 CD3DP04234 171 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 COX5BP10606 129 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 ACP1P24666 158 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 HTR1DP28221 377 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 PPP1R8Q12972 351 aaKnown RBP4.67□□□□□ -1.66
SCN1A-201ENST00000303395 GAGE1Q13065 139 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 SKP2Q13309 424 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 SMIM21Q3B7S5 101 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 LAIR1Q6GTX8 287 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 PQLC2Q6ZP29 291 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 CYP2G1PQ6ZSU1 146 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 HSD11B1LQ7Z5J1 315 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 ZNF683Q8IZ20 524 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 CLEC1BQ9P126 229 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 SLC17A4Q9Y2C5 497 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 C17orf105B2RV13 164 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 M0R1X1 148 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 CLDN12P56749 244 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 IFITM2Q01629 132 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 SLC25A26Q70HW3 274 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 ZFP62Q8NB50 900 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-201ENST00000303395 SYT8Q8NBV8 401 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 MYEOVQ96EZ4 313 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 ZNF552Q9H707 407 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-201ENST00000303395 RAXQ9Y2V3 346 aa4.67□□□□□ -1.66
SCN1A-201ENST00000303395 CEACAM18A8MTB9 384 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 HIST1H1EP10412 219 aaKnown RBP4.66□□□□□ -1.66
SCN1A-201ENST00000303395 NQO2P16083 231 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 ZIC1Q15915 447 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 PRSS8Q16651 343 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 HFEQ30201 348 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 TMEM9BQ9NQ34 198 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 PLSCR2Q9NRY7 297 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 WIPI2Q9Y4P8 454 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 PRRC2AP48634 2157 aaKnown RBP4.66□□□□□ -1.66
SCN1A-201ENST00000303395 PYCARD-AS1I3L0S3 204 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 CORTO00230 105 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 DXOO77932 396 aaKnown RBP4.66□□□□□ -1.66
SCN1A-201ENST00000303395 SEMA4FO95754 770 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 MLF1P58340 268 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 NKG7Q16617 165 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 ZNF260Q3ZCT1 412 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 ZNF660Q6AZW8 331 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-201ENST00000303395 ZNF600Q6ZNG1 722 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 C19orf47Q8N9M1 422 aaKnown RBP4.66□□□□□ -1.66
SCN1A-201ENST00000303395 OR6X1Q8NH79 312 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 CLN8Q9UBY8 286 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 B9D1Q9UPM9 204 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 GBF1Q92538 1859 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 IDSB3KWA1 339 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 SOCS6O14544 535 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 CTSSP25774 331 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 HIST3H3Q16695 136 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 RPEL1Q2QD12 228 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 ACSM5Q6NUN0 579 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 DHRS13Q6UX07 377 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 RSPO2Q6UXX9 243 aaPredicted RBP4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms