RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 MAP1SQ66K74 1059 aaPredicted RBP12.19□□□□□ -0.46
CLN3-261ENST00000637686 IQSEC3Q9UPP2 1182 aaPredicted RBP12.19□□□□□ -0.46
CLN3-261ENST00000637686 ADAMTSL1Q8N6G6 1762 aa12.19□□□□□ -0.46
CLN3-261ENST00000637686 ZNF609O15014 1411 aa12.19□□□□□ -0.46
CLN3-261ENST00000637686 ZNF646O15015 1829 aaPredicted RBP12.18□□□□□ -0.46
CLN3-261ENST00000637686 MYO3BQ8WXR4 1341 aa12.18□□□□□ -0.46
CLN3-261ENST00000637686 FRAT2O75474 233 aaPredicted RBP12.18□□□□□ -0.46
CLN3-261ENST00000637686 HSPA6P17066 643 aa12.18□□□□□ -0.46
CLN3-261ENST00000637686 ZNF280AP59817 542 aaPredicted RBP12.18□□□□□ -0.46
CLN3-261ENST00000637686 TIMM10P62072 90 aa12.18□□□□□ -0.46
CLN3-261ENST00000637686 OS9Q13438 667 aaPredicted RBP12.18□□□□□ -0.46
CLN3-261ENST00000637686 KIF4BQ2VIQ3 1234 aa12.18□□□□□ -0.46
CLN3-261ENST00000637686 RPAP2Q8IXW5 612 aaPredicted RBP12.18□□□□□ -0.46
CLN3-261ENST00000637686 CNTROBQ8N137 903 aa12.18□□□□□ -0.46
CLN3-261ENST00000637686 CERS5Q8N5B7 392 aa12.18□□□□□ -0.46
CLN3-261ENST00000637686 AKAP2Q9Y2D5 859 aa12.18□□□□□ -0.46
CLN3-261ENST00000637686 FAM205AQ6ZU69 1335 aa12.17□□□□□ -0.46
CLN3-261ENST00000637686 A0A1B0GUL7 405 aa12.17□□□□□ -0.46
CLN3-261ENST00000637686 ADORA1P30542 326 aa12.17□□□□□ -0.46
CLN3-261ENST00000637686 FKBP1AP62942 108 aaKnown RBP12.17□□□□□ -0.46
CLN3-261ENST00000637686 CHAF1AQ13111 956 aaPredicted RBP12.17□□□□□ -0.46
CLN3-261ENST00000637686 KIAA0825Q8IV33 1275 aa12.17□□□□□ -0.46
CLN3-261ENST00000637686 SIRT2Q8IXJ6 389 aa12.17□□□□□ -0.46
CLN3-261ENST00000637686 NOP58Q9Y2X3 529 aaKnown RBP12.17□□□□□ -0.46
CLN3-261ENST00000637686 ITGBL1O95965 494 aaPredicted RBP12.16□□□□□ -0.46
CLN3-261ENST00000637686 MFSD14BQ5SR56 506 aa12.16□□□□□ -0.46
CLN3-261ENST00000637686 OGFOD1Q8N543 542 aa12.16□□□□□ -0.46
CLN3-261ENST00000637686 ZC3H15Q8WU90 426 aaKnown RBP12.16□□□□□ -0.46
CLN3-261ENST00000637686 XAGE2Q96GT9 111 aa12.16□□□□□ -0.46
CLN3-261ENST00000637686 NEUROD6Q96NK8 337 aa12.16□□□□□ -0.46
CLN3-261ENST00000637686 MYOZ2Q9NPC6 264 aa12.16□□□□□ -0.46
CLN3-261ENST00000637686 PGAP2Q9UHJ9 254 aa12.16□□□□□ -0.46
CLN3-261ENST00000637686 HDAC9Q9UKV0 1011 aa12.16□□□□□ -0.46
CLN3-261ENST00000637686 EXOC6BQ9Y2D4 811 aa12.16□□□□□ -0.46
CLN3-261ENST00000637686 F8W031 263 aaPredicted RBP12.15□□□□□ -0.46
CLN3-261ENST00000637686 HMMRO75330 724 aa12.15□□□□□ -0.46
CLN3-261ENST00000637686 PHKA1P46020 1223 aa12.15□□□□□ -0.46
CLN3-261ENST00000637686 APLP1P51693 650 aa12.15□□□□□ -0.46
CLN3-261ENST00000637686 HDAC1Q13547 482 aaPredicted RBP12.15□□□□□ -0.46
CLN3-261ENST00000637686 CCDC102BQ68D86 513 aa12.15□□□□□ -0.46
CLN3-261ENST00000637686 GNL3LQ9NVN8 582 aaKnown RBP12.15□□□□□ -0.46
CLN3-261ENST00000637686 ASTN2O75129 1339 aaPredicted RBP12.14□□□□□ -0.47
CLN3-261ENST00000637686 PASKQ96RG2 1323 aa12.14□□□□□ -0.47
CLN3-261ENST00000637686 MMP14P50281 582 aa12.14□□□□□ -0.47
CLN3-261ENST00000637686 HTRA3P83110 453 aa12.14□□□□□ -0.47
CLN3-261ENST00000637686 FMR1Q06787 632 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLN3-261ENST00000637686 SCARF1Q14162 830 aa12.14□□□□□ -0.47
CLN3-261ENST00000637686 CCDC136Q96JN2 1154 aa12.14□□□□□ -0.47
CLN3-261ENST00000637686 TRAF5O00463 557 aa12.13□□□□□ -0.47
CLN3-261ENST00000637686 WNT10BO00744 389 aa12.13□□□□□ -0.47
CLN3-261ENST00000637686 GRIK5Q16478 980 aa12.13□□□□□ -0.47
CLN3-261ENST00000637686 NBPF9Q3BBW0 867 aa12.13□□□□□ -0.47
CLN3-261ENST00000637686 HSP90AB4PQ58FF6 505 aa12.13□□□□□ -0.47
CLN3-261ENST00000637686 TNNI3KQ59H18 835 aa12.13□□□□□ -0.47
CLN3-261ENST00000637686 GORABQ5T7V8 394 aa12.13□□□□□ -0.47
CLN3-261ENST00000637686 USP48Q86UV5 1035 aa12.13□□□□□ -0.47
CLN3-261ENST00000637686 TBC1D22AQ8WUA7 517 aa12.13□□□□□ -0.47
CLN3-261ENST00000637686 DCPSQ96C86 337 aaKnown RBP12.13□□□□□ -0.47
CLN3-261ENST00000637686 GLIS2Q9BZE0 524 aaPredicted RBP12.13□□□□□ -0.47
CLN3-261ENST00000637686 GPR108Q9NPR9 543 aa12.13□□□□□ -0.47
CLN3-261ENST00000637686 GGA3Q9NZ52 723 aa12.13□□□□□ -0.47
CLN3-261ENST00000637686 TTF2Q9UNY4 1162 aaKnown RBP12.13□□□□□ -0.47
CLN3-261ENST00000637686 FPGT-TNNI3KV9GXZ4 949 aa12.13□□□□□ -0.47
CLN3-261ENST00000637686 ARAP2Q8WZ64 1704 aa12.13□□□□□ -0.47
CLN3-261ENST00000637686 APBB1O00213 710 aa12.12□□□□□ -0.47
CLN3-261ENST00000637686 SEMA3EO15041 775 aa12.12□□□□□ -0.47
CLN3-261ENST00000637686 DLGAP5Q15398 846 aa12.12□□□□□ -0.47
CLN3-261ENST00000637686 CFAP100Q494V2 611 aa12.12□□□□□ -0.47
CLN3-261ENST00000637686 ANGEL2Q5VTE6 544 aaKnown RBP12.12□□□□□ -0.47
CLN3-261ENST00000637686 DLK2Q6UY11 383 aa12.12□□□□□ -0.47
CLN3-261ENST00000637686 CENPQQ7L2Z9 268 aaPredicted RBP12.12□□□□□ -0.47
CLN3-261ENST00000637686 CDC37L1Q7L3B6 337 aa12.12□□□□□ -0.47
CLN3-261ENST00000637686 KRT26Q7Z3Y9 468 aa12.12□□□□□ -0.47
CLN3-261ENST00000637686 ERC1Q8IUD2 1116 aa12.12□□□□□ -0.47
CLN3-261ENST00000637686 WDR66Q8TBY9 1149 aa12.12□□□□□ -0.47
CLN3-261ENST00000637686 CCDC8Q9H0W5 538 aaPredicted RBP12.12□□□□□ -0.47
CLN3-261ENST00000637686 RWDD1Q9H446 243 aaPredicted RBP12.12□□□□□ -0.47
CLN3-261ENST00000637686 DENND2AQ9ULE3 1009 aa12.12□□□□□ -0.47
CLN3-261ENST00000637686 PCDHB15Q9Y5E8 787 aa12.12□□□□□ -0.47
CLN3-261ENST00000637686 PCDHAC2Q9Y5I4 1007 aa12.12□□□□□ -0.47
CLN3-261ENST00000637686 COL1A1P02452 1464 aaPredicted RBP12.12□□□□□ -0.47
CLN3-261ENST00000637686 POLR2AP24928 1970 aaKnown RBP12.11□□□□□ -0.47
CLN3-261ENST00000637686 RBM5P52756 815 aaKnown RBP eCLIP12.11□□□□□ -0.47
CLN3-261ENST00000637686 RASGRF1Q13972 1273 aa12.11□□□□□ -0.47
CLN3-261ENST00000637686 RHPN1Q8TCX5 695 aa12.11□□□□□ -0.47
CLN3-261ENST00000637686 EAF2Q96CJ1 260 aaPredicted RBP12.11□□□□□ -0.47
CLN3-261ENST00000637686 ZBED3Q96IU2 234 aaPredicted RBP12.11□□□□□ -0.47
CLN3-261ENST00000637686 DBNDD2Q9BQY9 259 aa12.11□□□□□ -0.47
CLN3-261ENST00000637686 SCAF8Q9UPN6 1271 aaKnown RBP12.11□□□□□ -0.47
CLN3-261ENST00000637686 MYH13Q9UKX3 1938 aa12.1□□□□□ -0.47
CLN3-261ENST00000637686 TMEM88BA6NKF7 163 aa12.1□□□□□ -0.47
CLN3-261ENST00000637686 ADM5C9JUS6 153 aa12.1□□□□□ -0.47
CLN3-261ENST00000637686 ZBTB22O15209 634 aa12.1□□□□□ -0.47
CLN3-261ENST00000637686 RAB11FIP3O75154 756 aa12.1□□□□□ -0.47
CLN3-261ENST00000637686 CRKP46108 304 aa12.1□□□□□ -0.47
CLN3-261ENST00000637686 SULF1Q8IWU6 871 aa12.1□□□□□ -0.47
CLN3-261ENST00000637686 MTMR14Q8NCE2 650 aa12.1□□□□□ -0.47
CLN3-261ENST00000637686 PRMT6Q96LA8 375 aaPredicted RBP12.1□□□□□ -0.47
CLN3-261ENST00000637686 BCL11AQ9H165 835 aa12.1□□□□□ -0.47
CLN3-261ENST00000637686 IL1RAPL2Q9NP60 686 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms