RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ZNF532Q9HCE3 1301 aa20.2■□□□□ 0.82
CLN3-252ENST00000636907 TCRBV5S4A2TA0A5A2 114 aa20.19■□□□□ 0.82
CLN3-252ENST00000636907 SRGNP10124 158 aa20.19■□□□□ 0.82
CLN3-252ENST00000636907 HSPD1P10809 573 aaKnown RBP20.19■□□□□ 0.82
CLN3-252ENST00000636907 HIBADHP31937 336 aaKnown RBP20.19■□□□□ 0.82
CLN3-252ENST00000636907 PDE6BP35913 854 aa20.19■□□□□ 0.82
CLN3-252ENST00000636907 MAP3K12Q12852 859 aa20.19■□□□□ 0.82
CLN3-252ENST00000636907 TXNRD3Q86VQ6 643 aa20.19■□□□□ 0.82
CLN3-252ENST00000636907 DENND2AQ9ULE3 1009 aa20.19■□□□□ 0.82
CLN3-252ENST00000636907 COL11A2P13942 1736 aaPredicted RBP20.19■□□□□ 0.82
CLN3-252ENST00000636907 JAKMIP1Q96N16 626 aaKnown RBP20.19■□□□□ 0.82
CLN3-252ENST00000636907 TAF6LQ9Y6J9 622 aa20.19■□□□□ 0.82
CLN3-252ENST00000636907 LRRC37AA6NMS7 1700 aa20.18■□□□□ 0.82
CLN3-252ENST00000636907 GPAA1O43292 621 aa20.18■□□□□ 0.82
CLN3-252ENST00000636907 NPR1P16066 1061 aa20.18■□□□□ 0.82
CLN3-252ENST00000636907 CASTP20810 708 aaKnown RBP20.18■□□□□ 0.82
CLN3-252ENST00000636907 MAGEB6Q8N7X4 407 aa20.18■□□□□ 0.82
CLN3-252ENST00000636907 TM6SF1Q9BZW5 370 aa20.18■□□□□ 0.82
CLN3-252ENST00000636907 RPAP1Q9BWH6 1393 aaPredicted RBP20.17■□□□□ 0.82
CLN3-252ENST00000636907 SEMA3EO15041 775 aa20.17■□□□□ 0.82
CLN3-252ENST00000636907 MCM2P49736 904 aa20.17■□□□□ 0.82
CLN3-252ENST00000636907 TSGA10IPQ3SY00 556 aa20.17■□□□□ 0.82
CLN3-252ENST00000636907 IL27Q8NEV9 243 aa20.17■□□□□ 0.82
CLN3-252ENST00000636907 PDGFDQ9GZP0 370 aaPredicted RBP20.17■□□□□ 0.82
CLN3-252ENST00000636907 NSFL1CQ9UNZ2 370 aaKnown RBP20.17■□□□□ 0.82
CLN3-252ENST00000636907 PPEF1O14829 653 aaPredicted RBP20.16■□□□□ 0.82
CLN3-252ENST00000636907 FOXP2O15409 715 aa20.16■□□□□ 0.82
CLN3-252ENST00000636907 CPA1P15085 419 aa20.16■□□□□ 0.82
CLN3-252ENST00000636907 TMC4Q7Z404 712 aa20.16■□□□□ 0.82
CLN3-252ENST00000636907 TTC14Q96N46 770 aa20.16■□□□□ 0.82
CLN3-252ENST00000636907 ZSWIM6Q9HCJ5 1215 aa20.16■□□□□ 0.82
CLN3-252ENST00000636907 LRP2BPQ9P2M1 347 aa20.16■□□□□ 0.82
CLN3-252ENST00000636907 MYH13Q9UKX3 1938 aa20.16■□□□□ 0.82
CLN3-252ENST00000636907 CYP21A2P08686 494 aa20.16■□□□□ 0.82
CLN3-252ENST00000636907 SP8Q8IXZ3 490 aa20.16■□□□□ 0.82
CLN3-252ENST00000636907 GPR101Q96P66 508 aaPredicted RBP20.16■□□□□ 0.82
CLN3-252ENST00000636907 PDS5AQ29RF7 1337 aaKnown RBP20.15■□□□□ 0.82
CLN3-252ENST00000636907 FRAT2O75474 233 aaPredicted RBP20.15■□□□□ 0.82
CLN3-252ENST00000636907 UFL1O94874 794 aa20.15■□□□□ 0.82
CLN3-252ENST00000636907 HSP90AA1P07900 732 aaKnown RBP20.15■□□□□ 0.82
CLN3-252ENST00000636907 ATP2B4P23634 1241 aa20.15■□□□□ 0.82
CLN3-252ENST00000636907 C15orf52Q6ZUT6 534 aaKnown RBP20.15■□□□□ 0.82
CLN3-252ENST00000636907 FOXD4L1Q9NU39 408 aa20.15■□□□□ 0.82
CLN3-252ENST00000636907 PODXL2Q9NZ53 605 aa20.15■□□□□ 0.82
CLN3-252ENST00000636907 ABCF2Q9UG63 623 aa20.15■□□□□ 0.82
CLN3-252ENST00000636907 GGA1Q9UJY5 639 aa20.15■□□□□ 0.82
CLN3-252ENST00000636907 LTBP1Q14766 1721 aa20.14■□□□□ 0.81
CLN3-252ENST00000636907 ZBTB22O15209 634 aa20.14■□□□□ 0.81
CLN3-252ENST00000636907 PSMA5P28066 241 aa20.14■□□□□ 0.81
CLN3-252ENST00000636907 ALDH1B1P30837 517 aa20.14■□□□□ 0.81
CLN3-252ENST00000636907 NOL8Q76FK4 1167 aaKnown RBP20.14■□□□□ 0.81
CLN3-252ENST00000636907 MASTLQ96GX5 879 aa20.14■□□□□ 0.81
CLN3-252ENST00000636907 ATP6V0A2Q9Y487 856 aa20.14■□□□□ 0.81
CLN3-252ENST00000636907 CYP46A1Q9Y6A2 500 aa20.14■□□□□ 0.81
CLN3-252ENST00000636907 RUFY3Q7L099 469 aa20.13■□□□□ 0.81
CLN3-252ENST00000636907 TMX3Q96JJ7 454 aa20.13■□□□□ 0.81
CLN3-252ENST00000636907 A0A0G2JLW4 131 aa20.13■□□□□ 0.81
CLN3-252ENST00000636907 DDIT3P35638 169 aa20.13■□□□□ 0.81
CLN3-252ENST00000636907 AK2P54819 239 aa20.13■□□□□ 0.81
CLN3-252ENST00000636907 COL9A3Q14050 684 aaPredicted RBP20.13■□□□□ 0.81
CLN3-252ENST00000636907 KRT32Q14532 448 aa20.13■□□□□ 0.81
CLN3-252ENST00000636907 ZNF804AQ7Z570 1209 aa20.13■□□□□ 0.81
CLN3-252ENST00000636907 C2CD5Q86YS7 1000 aa20.13■□□□□ 0.81
CLN3-252ENST00000636907 CCDC125Q86Z20 511 aa20.13■□□□□ 0.81
CLN3-252ENST00000636907 TBC1D16Q8TBP0 767 aa20.13■□□□□ 0.81
CLN3-252ENST00000636907 RAI14Q9P0K7 980 aa20.13■□□□□ 0.81
CLN3-252ENST00000636907 CHAF1AQ13111 956 aaPredicted RBP20.12■□□□□ 0.81
CLN3-252ENST00000636907 TTLL5Q6EMB2 1281 aa20.12■□□□□ 0.81
CLN3-252ENST00000636907 AIDAQ96BJ3 306 aa20.12■□□□□ 0.81
CLN3-252ENST00000636907 PDRG1Q9NUG6 133 aa20.12■□□□□ 0.81
CLN3-252ENST00000636907 POLLQ9UGP5 575 aa20.12■□□□□ 0.81
CLN3-252ENST00000636907 FGAP02671 866 aa20.11■□□□□ 0.81
CLN3-252ENST00000636907 BLOC1S2Q6QNY1 142 aa20.11■□□□□ 0.81
CLN3-252ENST00000636907 STOX1Q6ZVD7 989 aa20.11■□□□□ 0.81
CLN3-252ENST00000636907 TDRD7Q8NHU6 1098 aaKnown RBP20.11■□□□□ 0.81
CLN3-252ENST00000636907 ZNF622Q969S3 477 aaKnown RBP eCLIP20.11■□□□□ 0.81
CLN3-252ENST00000636907 STRBPQ96SI9 672 aaKnown RBP20.11■□□□□ 0.81
CLN3-252ENST00000636907 CACNA1SQ13698 1873 aa20.1■□□□□ 0.81
CLN3-252ENST00000636907 MBD4O95243 580 aa20.1■□□□□ 0.81
CLN3-252ENST00000636907 CYP7A1P22680 504 aa20.1■□□□□ 0.81
CLN3-252ENST00000636907 CTNNA3Q9UI47 895 aa20.1■□□□□ 0.81
CLN3-252ENST00000636907 H0YIN7 160 aa20.1■□□□□ 0.81
CLN3-252ENST00000636907 RPS6KB1P23443 525 aa20.1■□□□□ 0.81
CLN3-252ENST00000636907 OLFM4Q6UX06 510 aa20.1■□□□□ 0.81
CLN3-252ENST00000636907 ADGRA1Q86SQ6 560 aa20.1■□□□□ 0.81
CLN3-252ENST00000636907 ILDR1Q86SU0 546 aaPredicted RBP20.1■□□□□ 0.81
CLN3-252ENST00000636907 NEK1Q96PY6 1258 aa20.1■□□□□ 0.81
CLN3-252ENST00000636907 ARMT1Q9H993 441 aa20.1■□□□□ 0.81
CLN3-252ENST00000636907 CHMP5Q9NZZ3 219 aa20.1■□□□□ 0.81
CLN3-252ENST00000636907 JAG2Q9Y219 1238 aa20.1■□□□□ 0.81
CLN3-252ENST00000636907 C6orf229H3BNL8 230 aa20.09■□□□□ 0.81
CLN3-252ENST00000636907 STYK1Q6J9G0 422 aa20.09■□□□□ 0.81
CLN3-252ENST00000636907 CHRNA5P30532 468 aa20.08■□□□□ 0.81
CLN3-252ENST00000636907 CUL4AQ13619 759 aa20.08■□□□□ 0.81
CLN3-252ENST00000636907 LCORLQ8N3X6 602 aa20.08■□□□□ 0.81
CLN3-252ENST00000636907 MIGA1Q8NAN2 632 aa20.08■□□□□ 0.81
CLN3-252ENST00000636907 ZNF384Q8TF68 577 aa20.08■□□□□ 0.81
CLN3-252ENST00000636907 SLC16A10Q8TF71 515 aa20.08■□□□□ 0.81
CLN3-252ENST00000636907 LARP6Q9BRS8 491 aaKnown RBP20.08■□□□□ 0.81
CLN3-252ENST00000636907 CD209Q9NNX6 404 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 121.4 ms