RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 RRS1Q15050 365 aaKnown RBP7.87□□□□□ -1.15
SCN1A-213ENST00000636759 KIAA1328Q86T90 577 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 IQCA1Q86XH1 822 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 KCND1Q9NSA2 647 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 AKAP2Q9Y2D5 859 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 FAM169AQ9Y6X4 670 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 HMOX1P09601 288 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 SYT1P21579 422 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 PPP2R3AQ06190 1150 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 ISM2Q6H9L7 571 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 KCNV1Q6PIU1 500 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 CEP112Q8N8E3 955 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 CCDC26Q8TAB7 109 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 BICD2Q8TD16 824 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 CENPHQ9H3R5 247 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 TAOK2Q9UL54 1235 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 ARHGEF10O15013 1369 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 NFAT5O94916 1531 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 POTEB2H3BUK9 544 aa7.86□□□□□ -1.15
SCN1A-213ENST00000636759 APBB1O00213 710 aa7.86□□□□□ -1.15
SCN1A-213ENST00000636759 EIF4A2Q14240 407 aaKnown RBP7.86□□□□□ -1.15
SCN1A-213ENST00000636759 TWISTNBQ3B726 338 aaPredicted RBP7.86□□□□□ -1.15
SCN1A-213ENST00000636759 SARM1Q6SZW1 724 aa7.86□□□□□ -1.15
SCN1A-213ENST00000636759 RPUSD2Q8IZ73 545 aaKnown RBP7.86□□□□□ -1.15
SCN1A-213ENST00000636759 AFAP1L1Q8TED9 768 aa7.86□□□□□ -1.15
SCN1A-213ENST00000636759 SMARCC1Q92922 1105 aaPredicted RBP7.86□□□□□ -1.15
SCN1A-213ENST00000636759 MCM8Q9UJA3 840 aa7.86□□□□□ -1.15
SCN1A-213ENST00000636759 EXOC5O00471 708 aa7.86□□□□□ -1.15
SCN1A-213ENST00000636759 SETSIPP0DME0 302 aa7.86□□□□□ -1.15
SCN1A-213ENST00000636759 MYBL2P10244 700 aa7.86□□□□□ -1.15
SCN1A-213ENST00000636759 EZRP15311 586 aaKnown RBP7.86□□□□□ -1.15
SCN1A-213ENST00000636759 KCNA6P17658 529 aa7.86□□□□□ -1.15
SCN1A-213ENST00000636759 KRT24Q2M2I5 525 aa7.86□□□□□ -1.15
SCN1A-213ENST00000636759 E4F1Q66K89 784 aaPredicted RBP7.86□□□□□ -1.15
SCN1A-213ENST00000636759 CEP57Q86XR8 500 aa7.86□□□□□ -1.15
SCN1A-213ENST00000636759 FAM177A1Q8N128 213 aaPredicted RBP7.86□□□□□ -1.15
SCN1A-213ENST00000636759 NAT10Q9H0A0 1025 aaKnown RBP7.86□□□□□ -1.15
SCN1A-213ENST00000636759 GBP3Q9H0R5 595 aa7.86□□□□□ -1.15
SCN1A-213ENST00000636759 FAM204AQ9H8W3 233 aa7.86□□□□□ -1.15
SCN1A-213ENST00000636759 MYO6Q9UM54 1294 aa7.86□□□□□ -1.15
SCN1A-213ENST00000636759 ANKRD33BA6NCL7 494 aa7.86□□□□□ -1.15
SCN1A-213ENST00000636759 CCT5P48643 541 aa7.86□□□□□ -1.15
SCN1A-213ENST00000636759 BORCS6Q96GS4 357 aa7.86□□□□□ -1.15
SCN1A-213ENST00000636759 SBNO1A3KN83 1393 aa7.86□□□□□ -1.15
SCN1A-213ENST00000636759 PES1O00541 588 aaKnown RBP7.85□□□□□ -1.15
SCN1A-213ENST00000636759 PEX19P40855 299 aa7.85□□□□□ -1.15
SCN1A-213ENST00000636759 TBC1D8BQ0IIM8 1120 aa7.85□□□□□ -1.15
SCN1A-213ENST00000636759 PDCD2Q16342 344 aaPredicted RBP7.85□□□□□ -1.15
SCN1A-213ENST00000636759 TMX4Q9H1E5 349 aaPredicted RBP7.85□□□□□ -1.15
SCN1A-213ENST00000636759 ADGRL3Q9HAR2 1447 aa7.85□□□□□ -1.15
SCN1A-213ENST00000636759 DDX60Q8IY21 1712 aaKnown RBP7.85□□□□□ -1.15
SCN1A-213ENST00000636759 FRMD3A2A2Y4 597 aa7.85□□□□□ -1.15
SCN1A-213ENST00000636759 MAP2K7O14733 419 aa7.85□□□□□ -1.15
SCN1A-213ENST00000636759 KINO60870 393 aaKnown RBP7.85□□□□□ -1.15
SCN1A-213ENST00000636759 GBP2P32456 591 aaPredicted RBP7.85□□□□□ -1.15
SCN1A-213ENST00000636759 TXLNAP40222 546 aa7.85□□□□□ -1.15
SCN1A-213ENST00000636759 CCNHP51946 323 aaPredicted RBP7.85□□□□□ -1.15
SCN1A-213ENST00000636759 NAP1L1P55209 391 aaKnown RBP7.85□□□□□ -1.15
SCN1A-213ENST00000636759 MPHOSPH8Q99549 860 aa7.85□□□□□ -1.15
SCN1A-213ENST00000636759 STK31Q9BXU1 1019 aa7.85□□□□□ -1.15
SCN1A-213ENST00000636759 SNUPNO95149 360 aaKnown RBP7.85□□□□□ -1.15
SCN1A-213ENST00000636759 ATP2B2Q01814 1243 aa7.85□□□□□ -1.15
SCN1A-213ENST00000636759 DCTN1Q14203 1278 aa7.85□□□□□ -1.15
SCN1A-213ENST00000636759 PREPLQ4J6C6 727 aaPredicted RBP7.85□□□□□ -1.15
SCN1A-213ENST00000636759 ZNF483Q8TF39 744 aaPredicted RBP7.85□□□□□ -1.15
SCN1A-213ENST00000636759 THOC1Q96FV9 657 aaKnown RBP7.85□□□□□ -1.15
SCN1A-213ENST00000636759 BAG1Q99933 345 aaPredicted RBP7.85□□□□□ -1.15
SCN1A-213ENST00000636759 IMPACTQ9P2X3 320 aa7.85□□□□□ -1.15
SCN1A-213ENST00000636759 AP1G2O75843 785 aa7.84□□□□□ -1.15
SCN1A-213ENST00000636759 DDR1Q08345 913 aa7.84□□□□□ -1.15
SCN1A-213ENST00000636759 CEP85LQ5SZL2 805 aa7.84□□□□□ -1.15
SCN1A-213ENST00000636759 KLHL23Q8NBE8 558 aa7.84□□□□□ -1.15
SCN1A-213ENST00000636759 TATDN2Q93075 761 aa7.84□□□□□ -1.15
SCN1A-213ENST00000636759 UTP14AQ9BVJ6 771 aaKnown RBP7.84□□□□□ -1.15
SCN1A-213ENST00000636759 MST1RQ04912 1400 aa7.84□□□□□ -1.15
SCN1A-213ENST00000636759 STRCP1A6NGW2 1772 aa7.84□□□□□ -1.15
SCN1A-213ENST00000636759 ZSCAN12O43309 604 aa7.84□□□□□ -1.15
SCN1A-213ENST00000636759 NEFHP12036 1026 aa7.84□□□□□ -1.15
SCN1A-213ENST00000636759 INHBEP58166 350 aa7.84□□□□□ -1.15
SCN1A-213ENST00000636759 ICA1Q05084 483 aa7.84□□□□□ -1.15
SCN1A-213ENST00000636759 TMC6Q7Z403 805 aa7.84□□□□□ -1.15
SCN1A-213ENST00000636759 ZKSCAN4Q969J2 545 aaPredicted RBP7.84□□□□□ -1.15
SCN1A-213ENST00000636759 TEX13AQ9BXU3 409 aaPredicted RBP7.84□□□□□ -1.15
SCN1A-213ENST00000636759 CLSTN2Q9H4D0 955 aa7.84□□□□□ -1.15
SCN1A-213ENST00000636759 CD248Q9HCU0 757 aa7.84□□□□□ -1.15
SCN1A-213ENST00000636759 FLT4P35916 1363 aa7.84□□□□□ -1.15
SCN1A-213ENST00000636759 SLIT3O75094 1523 aa7.84□□□□□ -1.15
SCN1A-213ENST00000636759 KIF1AQ12756 1690 aa7.84□□□□□ -1.15
SCN1A-213ENST00000636759 NPHP4O75161 1426 aaPredicted RBP7.84□□□□□ -1.16
SCN1A-213ENST00000636759 ANKRD18BA2A2Z9 1011 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 N4BP1O75113 896 aaKnown RBP7.83□□□□□ -1.16
SCN1A-213ENST00000636759 KCNJ6P48051 423 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 MRPL12P52815 198 aaKnown RBP7.83□□□□□ -1.16
SCN1A-213ENST00000636759 GNG11P61952 73 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 GRIK3Q13003 919 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 STX1AQ16623 288 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 VPS53Q5VIR6 699 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 ANKLE2Q86XL3 938 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 SAAL1Q96ER3 474 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 ZSWIM4Q9H7M6 989 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms