RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 BRI3BPQ8WY22 251 aa18.9■□□□□ 0.62
CLN3-249ENST00000636685 CDC5LQ99459 802 aaKnown RBP18.9■□□□□ 0.62
CLN3-249ENST00000636685 ZFYVE28Q9HCC9 887 aa18.9■□□□□ 0.62
CLN3-249ENST00000636685 ZNF804BA4D1E1 1349 aa18.9■□□□□ 0.62
CLN3-249ENST00000636685 SOX1O00570 391 aaPredicted RBP18.89■□□□□ 0.61
CLN3-249ENST00000636685 TMPOP42166 694 aaKnown RBP18.89■□□□□ 0.61
CLN3-249ENST00000636685 MTFR1Q15390 333 aa18.89■□□□□ 0.61
CLN3-249ENST00000636685 BSDC1Q9NW68 430 aaPredicted RBP18.89■□□□□ 0.61
CLN3-249ENST00000636685 MNX1P50219 401 aaPredicted RBP18.88■□□□□ 0.61
CLN3-249ENST00000636685 GOLGA2Q08379 1002 aa18.88■□□□□ 0.61
CLN3-249ENST00000636685 CCDC191Q8NCU4 936 aa18.88■□□□□ 0.61
CLN3-249ENST00000636685 CNKSR2Q8WXI2 1034 aa18.88■□□□□ 0.61
CLN3-249ENST00000636685 VEZTQ9HBM0 779 aa18.88■□□□□ 0.61
CLN3-249ENST00000636685 CWC25Q9NXE8 425 aaPredicted RBP18.88■□□□□ 0.61
CLN3-249ENST00000636685 AOX1Q06278 1338 aa18.88■□□□□ 0.61
CLN3-249ENST00000636685 CCL15-CCL14A0A0B4J2E2 113 aa18.87■□□□□ 0.61
CLN3-249ENST00000636685 HOXB7P09629 217 aa18.87■□□□□ 0.61
CLN3-249ENST00000636685 CTSWP56202 376 aa18.87■□□□□ 0.61
CLN3-249ENST00000636685 LMOD3Q0VAK6 560 aa18.87■□□□□ 0.61
CLN3-249ENST00000636685 CCL15Q16663 113 aa18.87■□□□□ 0.61
CLN3-249ENST00000636685 FAM43AQ8N2R8 423 aa18.87■□□□□ 0.61
CLN3-249ENST00000636685 CERS5Q8N5B7 392 aa18.87■□□□□ 0.61
CLN3-249ENST00000636685 MTMR14Q8NCE2 650 aa18.87■□□□□ 0.61
CLN3-249ENST00000636685 LRCH3Q96II8 777 aa18.87■□□□□ 0.61
CLN3-249ENST00000636685 GREM2Q9H772 168 aa18.87■□□□□ 0.61
CLN3-249ENST00000636685 PHAXQ9H814 394 aaKnown RBP18.87■□□□□ 0.61
CLN3-249ENST00000636685 CFAP100Q494V2 611 aa18.86■□□□□ 0.61
CLN3-249ENST00000636685 CCER1Q8TC90 406 aaPredicted RBP18.86■□□□□ 0.61
CLN3-249ENST00000636685 LEMD3Q9Y2U8 911 aa18.86■□□□□ 0.61
CLN3-249ENST00000636685 F8W031 263 aaPredicted RBP18.85■□□□□ 0.61
CLN3-249ENST00000636685 ECM2O94769 699 aaPredicted RBP18.85■□□□□ 0.61
CLN3-249ENST00000636685 RASA3Q14644 834 aa18.85■□□□□ 0.61
CLN3-249ENST00000636685 NEUROD2Q15784 382 aa18.85■□□□□ 0.61
CLN3-249ENST00000636685 DUSP27Q5VZP5 1158 aa18.85■□□□□ 0.61
CLN3-249ENST00000636685 UBE2Q1Q7Z7E8 422 aa18.85■□□□□ 0.61
CLN3-249ENST00000636685 TTLL11Q8NHH1 800 aa18.85■□□□□ 0.61
CLN3-249ENST00000636685 PRMT6Q96LA8 375 aaPredicted RBP18.85■□□□□ 0.61
CLN3-249ENST00000636685 HTATIP2Q9BUP3 242 aa18.85■□□□□ 0.61
CLN3-249ENST00000636685 SPDYE2BA6NHP3 402 aa18.84■□□□□ 0.61
CLN3-249ENST00000636685 ZBTB7BO15156 539 aaPredicted RBP18.84■□□□□ 0.61
CLN3-249ENST00000636685 MYO1BO43795 1136 aa18.84■□□□□ 0.61
CLN3-249ENST00000636685 SPDYE6P0CI01 402 aa18.84■□□□□ 0.61
CLN3-249ENST00000636685 LACTBP83111 547 aaPredicted RBP18.84■□□□□ 0.61
CLN3-249ENST00000636685 GTF2A2P52657 109 aa18.83■□□□□ 0.6
CLN3-249ENST00000636685 KIF22Q14807 665 aa18.83■□□□□ 0.6
CLN3-249ENST00000636685 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.83■□□□□ 0.6
CLN3-249ENST00000636685 CD209Q9NNX6 404 aa18.83■□□□□ 0.6
CLN3-249ENST00000636685 NR2E3Q9Y5X4 410 aa18.83■□□□□ 0.6
CLN3-249ENST00000636685 A0A1W2PPC1 479 aa18.81■□□□□ 0.6
CLN3-249ENST00000636685 TLR2O60603 784 aa18.81■□□□□ 0.6
CLN3-249ENST00000636685 CDAN1Q8IWY9 1227 aa18.81■□□□□ 0.6
CLN3-249ENST00000636685 METTL22Q9BUU2 404 aaPredicted RBP18.81■□□□□ 0.6
CLN3-249ENST00000636685 GJA8P48165 433 aa18.8■□□□□ 0.6
CLN3-249ENST00000636685 PRMT2P55345 433 aa18.8■□□□□ 0.6
CLN3-249ENST00000636685 VGLL4Q14135 290 aa18.8■□□□□ 0.6
CLN3-249ENST00000636685 NKX2-3Q8TAU0 364 aa18.8■□□□□ 0.6
CLN3-249ENST00000636685 TRIM35Q9UPQ4 493 aa18.8■□□□□ 0.6
CLN3-249ENST00000636685 GNRH1P01148 92 aa18.79■□□□□ 0.6
CLN3-249ENST00000636685 GJB1P08034 283 aa18.79■□□□□ 0.6
CLN3-249ENST00000636685 CCL5P13501 91 aa18.79■□□□□ 0.6
CLN3-249ENST00000636685 CTGFP29279 349 aa18.79■□□□□ 0.6
CLN3-249ENST00000636685 IGHMBP2P38935 993 aaKnown RBP18.79■□□□□ 0.6
CLN3-249ENST00000636685 KCNJ4P48050 445 aa18.79■□□□□ 0.6
CLN3-249ENST00000636685 RBM5P52756 815 aaKnown RBP eCLIP18.79■□□□□ 0.6
CLN3-249ENST00000636685 ANKRD2Q9GZV1 360 aa18.79■□□□□ 0.6
CLN3-249ENST00000636685 UNC80Q8N2C7 3258 aa18.78■□□□□ 0.6
CLN3-249ENST00000636685 SNAP23O00161 211 aa18.78■□□□□ 0.6
CLN3-249ENST00000636685 WDHD1O75717 1129 aaPredicted RBP18.78■□□□□ 0.6
CLN3-249ENST00000636685 MAP3K9P80192 1104 aa18.78■□□□□ 0.6
CLN3-249ENST00000636685 CCDC146Q8IYE0 955 aa18.78■□□□□ 0.6
CLN3-249ENST00000636685 STAP2Q9UGK3 403 aa18.78■□□□□ 0.6
CLN3-249ENST00000636685 SRRDQ9UH36 339 aa18.78■□□□□ 0.6
CLN3-249ENST00000636685 JAG2Q9Y219 1238 aa18.78■□□□□ 0.6
CLN3-249ENST00000636685 BTBD19C9JJ37 291 aa18.77■□□□□ 0.6
CLN3-249ENST00000636685 FARP2O94887 1054 aaPredicted RBP18.77■□□□□ 0.6
CLN3-249ENST00000636685 GRK4P32298 578 aa18.77■□□□□ 0.6
CLN3-249ENST00000636685 TRIM47Q96LD4 638 aa18.77■□□□□ 0.6
CLN3-249ENST00000636685 TEPSINQ96N21 525 aa18.77■□□□□ 0.6
CLN3-249ENST00000636685 RNF208Q9H0X6 261 aa18.77■□□□□ 0.6
CLN3-249ENST00000636685 IRS2Q9Y4H2 1338 aa18.76■□□□□ 0.59
CLN3-249ENST00000636685 ALPK3Q96L96 1907 aa18.76■□□□□ 0.59
CLN3-249ENST00000636685 IGKV5-2P06315 115 aa18.76■□□□□ 0.59
CLN3-249ENST00000636685 PSMC4P43686 418 aa18.76■□□□□ 0.59
CLN3-249ENST00000636685 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.76■□□□□ 0.59
CLN3-249ENST00000636685 RAET1EQ8TD07 263 aa18.76■□□□□ 0.59
CLN3-249ENST00000636685 ZNF70Q9UC06 446 aaPredicted RBP18.76■□□□□ 0.59
CLN3-249ENST00000636685 RIPOR2Q9Y4F9 1068 aa18.76■□□□□ 0.59
CLN3-249ENST00000636685 CSADQ9Y600 493 aa18.76■□□□□ 0.59
CLN3-249ENST00000636685 ARAP2Q8WZ64 1704 aa18.76■□□□□ 0.59
CLN3-249ENST00000636685 ELL2O00472 640 aaPredicted RBP18.75■□□□□ 0.59
CLN3-249ENST00000636685 CETPP11597 493 aa18.75■□□□□ 0.59
CLN3-249ENST00000636685 OSBPP22059 807 aa18.75■□□□□ 0.59
CLN3-249ENST00000636685 CHRNDQ07001 517 aa18.75■□□□□ 0.59
CLN3-249ENST00000636685 TNFAIP1Q13829 316 aa18.75■□□□□ 0.59
CLN3-249ENST00000636685 SPDYE2Q495Y8 402 aa18.75■□□□□ 0.59
CLN3-249ENST00000636685 COL25A1Q9BXS0 654 aaPredicted RBP18.75■□□□□ 0.59
CLN3-249ENST00000636685 MBIPQ9NS73 344 aa18.75■□□□□ 0.59
CLN3-249ENST00000636685 CPA4Q9UI42 421 aa18.75■□□□□ 0.59
CLN3-249ENST00000636685 MAP3K2Q9Y2U5 619 aa18.75■□□□□ 0.59
CLN3-249ENST00000636685 A0A1B0GUL6 1792 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms