RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	HHIP	Q96QV1	700 aa		5.51	□□□□□ -1.53
CNOT1-223	ENST00000628857	GZF1	Q9H116	711 aa	Predicted RBP	5.51	□□□□□ -1.53
CNOT1-223	ENST00000628857	EHD4	Q9H223	541 aa		5.51	□□□□□ -1.53
CNOT1-223	ENST00000628857	CLEC4M	Q9H2X3	399 aa	Predicted RBP	5.51	□□□□□ -1.53
CNOT1-223	ENST00000628857	NPHS2	Q9NP85	383 aa		5.51	□□□□□ -1.53
CNOT1-223	ENST00000628857	SH2B1	Q9NRF2	756 aa	Predicted RBP	5.51	□□□□□ -1.53
CNOT1-223	ENST00000628857	LATS2	Q9NRM7	1088 aa		5.51	□□□□□ -1.53
CNOT1-223	ENST00000628857	PNMA6F	A0A0J9YX94	578 aa		5.5	□□□□□ -1.53
CNOT1-223	ENST00000628857	FAM229A	H3BQW9	127 aa		5.5	□□□□□ -1.53
CNOT1-223	ENST00000628857	SOX1	O00570	391 aa	Predicted RBP	5.5	□□□□□ -1.53
CNOT1-223	ENST00000628857	TRPA1	O75762	1119 aa		5.5	□□□□□ -1.53
CNOT1-223	ENST00000628857	PROC	P04070	461 aa		5.5	□□□□□ -1.53
CNOT1-223	ENST00000628857	ESRRA	P11474	423 aa	Predicted RBP	5.5	□□□□□ -1.53
CNOT1-223	ENST00000628857	GATA4	P43694	442 aa		5.5	□□□□□ -1.53
CNOT1-223	ENST00000628857	ATP2B2	Q01814	1243 aa		5.5	□□□□□ -1.53
CNOT1-223	ENST00000628857	C19orf57	Q0VDD7	668 aa		5.5	□□□□□ -1.53
CNOT1-223	ENST00000628857	IKBKE	Q14164	716 aa		5.5	□□□□□ -1.53
CNOT1-223	ENST00000628857	MBTPS1	Q14703	1052 aa		5.5	□□□□□ -1.53
CNOT1-223	ENST00000628857	CCDC27	Q2M243	656 aa		5.5	□□□□□ -1.53
CNOT1-223	ENST00000628857	TXNRD3	Q86VQ6	643 aa		5.5	□□□□□ -1.53
CNOT1-223	ENST00000628857	GLIS3	Q8NEA6	775 aa		5.5	□□□□□ -1.53
CNOT1-223	ENST00000628857	SPOCK3	Q9BQ16	436 aa		5.5	□□□□□ -1.53
CNOT1-223	ENST00000628857	TMEM238L	A0A1B0GVL6	79 aa		5.49	□□□□□ -1.53
CNOT1-223	ENST00000628857	MEGF11	A6BM72	1044 aa		5.49	□□□□□ -1.53
CNOT1-223	ENST00000628857	ANKRD33B	A6NCL7	494 aa		5.49	□□□□□ -1.53
CNOT1-223	ENST00000628857	GRIA4	P48058	902 aa		5.49	□□□□□ -1.53
CNOT1-223	ENST00000628857	GRM2	Q14416	872 aa		5.49	□□□□□ -1.53
CNOT1-223	ENST00000628857	GALNT11	Q8NCW6	608 aa		5.49	□□□□□ -1.53
CNOT1-223	ENST00000628857	DDX54	Q8TDD1	881 aa	Known RBP	5.49	□□□□□ -1.53
CNOT1-223	ENST00000628857	ABCB6	Q9NP58	842 aa		5.49	□□□□□ -1.53
CNOT1-223	ENST00000628857	GADD45B	O75293	160 aa	Predicted RBP	5.48	□□□□□ -1.53
CNOT1-223	ENST00000628857	PRPF40A	O75400	957 aa	Known RBP	5.48	□□□□□ -1.53
CNOT1-223	ENST00000628857	B3GALT4	O96024	378 aa		5.48	□□□□□ -1.53
CNOT1-223	ENST00000628857	MAPK8	P45983	427 aa		5.48	□□□□□ -1.53
CNOT1-223	ENST00000628857	GPAT2	Q6NUI2	795 aa		5.48	□□□□□ -1.53
CNOT1-223	ENST00000628857		Q6ZS46	218 aa		5.48	□□□□□ -1.53
CNOT1-223	ENST00000628857	ASAP3	Q8TDY4	903 aa		5.48	□□□□□ -1.53
CNOT1-223	ENST00000628857	EPS8L3	Q8TE67	593 aa	Known RBP	5.48	□□□□□ -1.53
CNOT1-223	ENST00000628857	WFDC12	Q8WWY7	111 aa		5.48	□□□□□ -1.53
CNOT1-223	ENST00000628857	KLHDC7B	Q96G42	594 aa		5.48	□□□□□ -1.53
CNOT1-223	ENST00000628857	USP21	Q9UK80	565 aa		5.48	□□□□□ -1.53
CNOT1-223	ENST00000628857	SPG7	Q9UQ90	795 aa		5.48	□□□□□ -1.53
CNOT1-223	ENST00000628857		F8W735	103 aa	Predicted RBP	5.47	□□□□□ -1.53
CNOT1-223	ENST00000628857	P4HB	P07237	508 aa	Known RBP	5.47	□□□□□ -1.53
CNOT1-223	ENST00000628857	ITGAE	P38570	1179 aa		5.47	□□□□□ -1.53
CNOT1-223	ENST00000628857	PCDH1	Q08174	1060 aa		5.47	□□□□□ -1.53
CNOT1-223	ENST00000628857	ZNF423	Q2M1K9	1284 aa		5.47	□□□□□ -1.53
CNOT1-223	ENST00000628857	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	5.47	□□□□□ -1.53
CNOT1-223	ENST00000628857	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	5.47	□□□□□ -1.53
CNOT1-223	ENST00000628857	EAPP	Q56P03	285 aa	Predicted RBP	5.47	□□□□□ -1.53
CNOT1-223	ENST00000628857	SHISA2	Q6UWI4	295 aa		5.47	□□□□□ -1.53
CNOT1-223	ENST00000628857	FOXD4L3	Q6VB84	417 aa	Predicted RBP	5.47	□□□□□ -1.53
CNOT1-223	ENST00000628857	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	5.47	□□□□□ -1.53
CNOT1-223	ENST00000628857	NPAS4	Q8IUM7	802 aa		5.47	□□□□□ -1.53
CNOT1-223	ENST00000628857	DZIP1L	Q8IYY4	767 aa	Known RBP	5.47	□□□□□ -1.53
CNOT1-223	ENST00000628857	SSBP4	Q9BWG4	385 aa	Predicted RBP	5.47	□□□□□ -1.53
CNOT1-223	ENST00000628857	BCO2	Q9BYV7	579 aa		5.47	□□□□□ -1.53
CNOT1-223	ENST00000628857	ZNF576	Q9H609	170 aa		5.47	□□□□□ -1.53
CNOT1-223	ENST00000628857	AKTIP	Q9H8T0	292 aa		5.47	□□□□□ -1.53
CNOT1-223	ENST00000628857	SYNGAP1	Q96PV0	1343 aa		5.47	□□□□□ -1.53
CNOT1-223	ENST00000628857	METTL12	A8MUP2	240 aa		5.46	□□□□□ -1.54
CNOT1-223	ENST00000628857	CYP11A1	P05108	521 aa		5.46	□□□□□ -1.54
CNOT1-223	ENST00000628857	LDHB	P07195	334 aa	Known RBP	5.46	□□□□□ -1.54
CNOT1-223	ENST00000628857	H2AFB1	P0C5Y9	115 aa		5.46	□□□□□ -1.54
CNOT1-223	ENST00000628857	H2AFB2	P0C5Z0	115 aa		5.46	□□□□□ -1.54
CNOT1-223	ENST00000628857	SPRED3	Q2MJR0	410 aa		5.46	□□□□□ -1.54
CNOT1-223	ENST00000628857	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	5.46	□□□□□ -1.54
CNOT1-223	ENST00000628857	SLC51A	Q86UW1	340 aa		5.46	□□□□□ -1.54
CNOT1-223	ENST00000628857	PPM1H	Q9ULR3	514 aa		5.46	□□□□□ -1.54
CNOT1-223	ENST00000628857	NOS3	P29474	1203 aa		5.45	□□□□□ -1.54
CNOT1-223	ENST00000628857	GNA15	P30679	374 aa		5.45	□□□□□ -1.54
CNOT1-223	ENST00000628857	GSTT1	P30711	240 aa		5.45	□□□□□ -1.54
CNOT1-223	ENST00000628857	DUOXA2	Q1HG44	320 aa		5.45	□□□□□ -1.54
CNOT1-223	ENST00000628857	UVSSA	Q2YD98	709 aa		5.45	□□□□□ -1.54
CNOT1-223	ENST00000628857	TXNDC11	Q6PKC3	985 aa		5.45	□□□□□ -1.54
CNOT1-223	ENST00000628857	CEP41	Q9BYV8	373 aa		5.45	□□□□□ -1.54
CNOT1-223	ENST00000628857	NRSN2	Q9GZP1	204 aa		5.45	□□□□□ -1.54
CNOT1-223	ENST00000628857	SUGCT	Q9HAC7	445 aa		5.45	□□□□□ -1.54
CNOT1-223	ENST00000628857	KCNK4	Q9NYG8	393 aa		5.45	□□□□□ -1.54
CNOT1-223	ENST00000628857	FAM8A1	Q9UBU6	413 aa		5.45	□□□□□ -1.54
CNOT1-223	ENST00000628857	ADAM11	O75078	769 aa		5.44	□□□□□ -1.54
CNOT1-223	ENST00000628857	AP3B2	Q13367	1082 aa		5.44	□□□□□ -1.54
CNOT1-223	ENST00000628857	EXOSC6	Q5RKV6	272 aa	Known RBP	5.44	□□□□□ -1.54
CNOT1-223	ENST00000628857	SCARA3	Q6AZY7	606 aa		5.44	□□□□□ -1.54
CNOT1-223	ENST00000628857	NXPE4	Q6UWF7	544 aa		5.44	□□□□□ -1.54
CNOT1-223	ENST00000628857	DTHD1	Q6ZMT9	781 aa		5.44	□□□□□ -1.54
CNOT1-223	ENST00000628857	KIAA1211	Q6ZU35	1233 aa		5.44	□□□□□ -1.54
CNOT1-223	ENST00000628857	FBXO33	Q7Z6M2	555 aa		5.44	□□□□□ -1.54
CNOT1-223	ENST00000628857	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	5.44	□□□□□ -1.54
CNOT1-223	ENST00000628857	RNF208	Q9H0X6	261 aa		5.44	□□□□□ -1.54
CNOT1-223	ENST00000628857	C12orf49	Q9H741	205 aa		5.44	□□□□□ -1.54
CNOT1-223	ENST00000628857	CDC25B	P30305	580 aa		5.43	□□□□□ -1.54
CNOT1-223	ENST00000628857	IREB2	P48200	963 aa	Known RBP	5.43	□□□□□ -1.54
CNOT1-223	ENST00000628857	HNRNPU	Q00839	825 aa	Known RBP eCLIP	5.43	□□□□□ -1.54
CNOT1-223	ENST00000628857	PPP2R3A	Q06190	1150 aa		5.43	□□□□□ -1.54
CNOT1-223	ENST00000628857	NKAPL	Q5M9Q1	402 aa		5.43	□□□□□ -1.54
CNOT1-223	ENST00000628857	TMCO4	Q5TGY1	634 aa		5.43	□□□□□ -1.54
CNOT1-223	ENST00000628857	ANKRD34A	Q69YU3	496 aa		5.43	□□□□□ -1.54
CNOT1-223	ENST00000628857	PI16	Q6UXB8	463 aa		5.43	□□□□□ -1.54
CNOT1-223	ENST00000628857	SMG8	Q8ND04	991 aa	Known RBP	5.43	□□□□□ -1.54

Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms