RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 FBXL16Q8N461 479 aa26.15■■□□□ 1.78
PNKP-220ENST00000627232 ARHGEF1Q92888 912 aaKnown RBP26.15■■□□□ 1.78
PNKP-220ENST00000627232 GTF3C6Q969F1 213 aa26.15■■□□□ 1.78
PNKP-220ENST00000627232 TCRBV5S4A2TA0A5A2 114 aa26.14■■□□□ 1.78
PNKP-220ENST00000627232 MBD3O95983 291 aa26.14■■□□□ 1.78
PNKP-220ENST00000627232 FGAP02671 866 aa26.14■■□□□ 1.78
PNKP-220ENST00000627232 MAP3K12Q12852 859 aa26.14■■□□□ 1.78
PNKP-220ENST00000627232 TPTE2Q6XPS3 522 aa26.14■■□□□ 1.78
PNKP-220ENST00000627232 TAF1P21675 1872 aa26.14■■□□□ 1.78
PNKP-220ENST00000627232 ZNF532Q9HCE3 1301 aa26.14■■□□□ 1.77
PNKP-220ENST00000627232 TTLL5Q6EMB2 1281 aa26.14■■□□□ 1.77
PNKP-220ENST00000627232 TMEM87AQ8NBN3 555 aa26.14■■□□□ 1.77
PNKP-220ENST00000627232 NLRP3Q96P20 1036 aa26.14■■□□□ 1.77
PNKP-220ENST00000627232 MTMR6Q9Y217 621 aa26.14■■□□□ 1.77
PNKP-220ENST00000627232 FGD1P98174 961 aa26.13■■□□□ 1.77
PNKP-220ENST00000627232 SMIM5Q71RC9 77 aa26.13■■□□□ 1.77
PNKP-220ENST00000627232 WWC3Q9ULE0 1092 aa26.13■■□□□ 1.77
PNKP-220ENST00000627232 TCHHQ07283 1943 aa26.13■■□□□ 1.77
PNKP-220ENST00000627232 ZNF804BA4D1E1 1349 aa26.12■■□□□ 1.77
PNKP-220ENST00000627232 A0A0G2JLW4 131 aa26.12■■□□□ 1.77
PNKP-220ENST00000627232 SNAP23O00161 211 aa26.12■■□□□ 1.77
PNKP-220ENST00000627232 ADRA2BP18089 450 aa26.12■■□□□ 1.77
PNKP-220ENST00000627232 TRAPPC3LQ5T215 181 aa26.12■■□□□ 1.77
PNKP-220ENST00000627232 BRF1Q92994 677 aa26.12■■□□□ 1.77
PNKP-220ENST00000627232 CHMP4CQ96CF2 233 aa26.12■■□□□ 1.77
PNKP-220ENST00000627232 QTRT2Q9H974 415 aaKnown RBP26.12■■□□□ 1.77
PNKP-220ENST00000627232 PFKFB2O60825 505 aa26.11■■□□□ 1.77
PNKP-220ENST00000627232 BCAMP50895 628 aa26.11■■□□□ 1.77
PNKP-220ENST00000627232 LARP1BQ659C4 914 aaKnown RBP26.11■■□□□ 1.77
PNKP-220ENST00000627232 AEBP2Q6ZN18 517 aaPredicted RBP26.11■■□□□ 1.77
PNKP-220ENST00000627232 CHAMP1Q96JM3 812 aa26.11■■□□□ 1.77
PNKP-220ENST00000627232 LLPHQ9BRT6 129 aaKnown RBP26.11■■□□□ 1.77
PNKP-220ENST00000627232 ZMYM6O95789 1325 aa26.11■■□□□ 1.77
PNKP-220ENST00000627232 RFC4P35249 363 aa26.1■■□□□ 1.77
PNKP-220ENST00000627232 ALX1Q15699 326 aa26.1■■□□□ 1.77
PNKP-220ENST00000627232 GNL3LQ9NVN8 582 aaKnown RBP26.1■■□□□ 1.77
PNKP-220ENST00000627232 MINPP1Q9UNW1 487 aa26.1■■□□□ 1.77
PNKP-220ENST00000627232 UBR3Q6ZT12 1888 aa26.1■■□□□ 1.77
PNKP-220ENST00000627232 WDR19Q8NEZ3 1342 aa26.1■■□□□ 1.77
PNKP-220ENST00000627232 ZNF213O14771 459 aa26.09■■□□□ 1.77
PNKP-220ENST00000627232 MRE11P49959 708 aa26.09■■□□□ 1.77
PNKP-220ENST00000627232 STK3Q13188 491 aa26.09■■□□□ 1.77
PNKP-220ENST00000627232 AMIGO3Q86WK7 504 aa26.09■■□□□ 1.77
PNKP-220ENST00000627232 GPT2Q8TD30 523 aa26.09■■□□□ 1.77
PNKP-220ENST00000627232 BRWD3Q6RI45 1802 aa26.09■■□□□ 1.77
PNKP-220ENST00000627232 FAM196AQ6ZSG2 479 aa26.09■■□□□ 1.77
PNKP-220ENST00000627232 CELF1Q92879 486 aaKnown RBP26.09■■□□□ 1.77
PNKP-220ENST00000627232 ZNF274Q96GC6 653 aaPredicted RBP26.09■■□□□ 1.77
PNKP-220ENST00000627232 STRBPQ96SI9 672 aaKnown RBP26.09■■□□□ 1.77
PNKP-220ENST00000627232 NCLP19338 710 aaKnown RBP26.08■■□□□ 1.77
PNKP-220ENST00000627232 EVCP57679 992 aa26.08■■□□□ 1.77
PNKP-220ENST00000627232 RPS8P62241 208 aaKnown RBP26.08■■□□□ 1.77
PNKP-220ENST00000627232 NCOA7Q8NI08 942 aa26.08■■□□□ 1.77
PNKP-220ENST00000627232 AIDAQ96BJ3 306 aa26.08■■□□□ 1.77
PNKP-220ENST00000627232 CARMIL3Q8ND23 1372 aa26.07■■□□□ 1.76
PNKP-220ENST00000627232 ZNF445P59923 1031 aa26.07■■□□□ 1.76
PNKP-220ENST00000627232 MB21D2Q8IYB1 491 aaPredicted RBP26.07■■□□□ 1.76
PNKP-220ENST00000627232 MAGEB6Q8N7X4 407 aa26.07■■□□□ 1.76
PNKP-220ENST00000627232 LRRC2Q9BYS8 371 aa26.07■■□□□ 1.76
PNKP-220ENST00000627232 SLC27A3Q5K4L6 730 aa26.06■■□□□ 1.76
PNKP-220ENST00000627232 CAVIN1Q6NZI2 390 aaKnown RBP26.06■■□□□ 1.76
PNKP-220ENST00000627232 SMARCC2Q8TAQ2 1214 aa26.06■■□□□ 1.76
PNKP-220ENST00000627232 ANKRD2Q9GZV1 360 aa26.06■■□□□ 1.76
PNKP-220ENST00000627232 VPS37CA5D8V6 355 aaPredicted RBP26.05■■□□□ 1.76
PNKP-220ENST00000627232 MCM5P33992 734 aa26.05■■□□□ 1.76
PNKP-220ENST00000627232 HAND2P61296 217 aa26.05■■□□□ 1.76
PNKP-220ENST00000627232 SCRN1Q12765 414 aa26.05■■□□□ 1.76
PNKP-220ENST00000627232 CSPP1Q1MSJ5 1256 aa26.05■■□□□ 1.76
PNKP-220ENST00000627232 CAVIN4Q5BKX8 364 aa26.05■■□□□ 1.76
PNKP-220ENST00000627232 LRRC4BQ9NT99 713 aa26.05■■□□□ 1.76
PNKP-220ENST00000627232 TNRC6CQ9HCJ0 1690 aaKnown RBP26.05■■□□□ 1.76
PNKP-220ENST00000627232 HMGB2P26583 209 aaKnown RBP26.04■■□□□ 1.76
PNKP-220ENST00000627232 APOBRQ0VD83 1088 aa26.04■■□□□ 1.76
PNKP-220ENST00000627232 RALYLQ86SE5 291 aaKnown RBP26.04■■□□□ 1.76
PNKP-220ENST00000627232 USP48Q86UV5 1035 aa26.04■■□□□ 1.76
PNKP-220ENST00000627232 PATL2C9JE40 543 aaKnown RBP26.04■■□□□ 1.76
PNKP-220ENST00000627232 SEMA3EO15041 775 aa26.04■■□□□ 1.76
PNKP-220ENST00000627232 ZBTB22O15209 634 aa26.04■■□□□ 1.76
PNKP-220ENST00000627232 GNAT2P19087 354 aa26.04■■□□□ 1.76
PNKP-220ENST00000627232 GRPEL1Q9HAV7 217 aa26.04■■□□□ 1.76
PNKP-220ENST00000627232 PNPLA7Q6ZV29 1317 aa26.03■■□□□ 1.76
PNKP-220ENST00000627232 CHD4Q14839 1912 aa26.03■■□□□ 1.76
PNKP-220ENST00000627232 MYH13Q9UKX3 1938 aa26.03■■□□□ 1.76
PNKP-220ENST00000627232 XRCC6P12956 609 aaKnown RBP eCLIP26.03■■□□□ 1.76
PNKP-220ENST00000627232 HMGN5P82970 282 aaKnown RBP26.03■■□□□ 1.76
PNKP-220ENST00000627232 ZSCAN23Q3MJ62 389 aa26.03■■□□□ 1.76
PNKP-220ENST00000627232 KRT27Q7Z3Y8 459 aa26.03■■□□□ 1.76
PNKP-220ENST00000627232 DENND2AQ9ULE3 1009 aa26.03■■□□□ 1.76
PNKP-220ENST00000627232 CNPY2Q9Y2B0 182 aa26.03■■□□□ 1.76
PNKP-220ENST00000627232 PRC1O43663 620 aa26.02■■□□□ 1.76
PNKP-220ENST00000627232 PHF14O94880 888 aa26.02■■□□□ 1.76
PNKP-220ENST00000627232 MBD4O95243 580 aa26.02■■□□□ 1.76
PNKP-220ENST00000627232 APPP05067 770 aa26.02■■□□□ 1.76
PNKP-220ENST00000627232 TM4SF1P30408 202 aa26.02■■□□□ 1.76
PNKP-220ENST00000627232 LRP2BPQ9P2M1 347 aa26.02■■□□□ 1.76
PNKP-220ENST00000627232 KIF3AQ9Y496 699 aa26.02■■□□□ 1.76
PNKP-220ENST00000627232 PDS5AQ29RF7 1337 aaKnown RBP26.02■■□□□ 1.76
PNKP-220ENST00000627232 TIAM2Q8IVF5 1701 aa26.02■■□□□ 1.76
PNKP-220ENST00000627232 PDIA3P30101 505 aaKnown RBP26.01■■□□□ 1.75
PNKP-220ENST00000627232 GYG1P46976 350 aa26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms