RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 RXRBP28702 533 aa6.38□□□□□ -1.39
SCN1A-208ENST00000625916 AAMPQ13685 434 aa6.38□□□□□ -1.39
SCN1A-208ENST00000625916 DTX1Q86Y01 620 aa6.38□□□□□ -1.39
SCN1A-208ENST00000625916 KRTAP19-1Q8IUB9 90 aa6.38□□□□□ -1.39
SCN1A-208ENST00000625916 TMEM102Q8N9M5 508 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-208ENST00000625916 C12orf50Q8NA57 414 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-208ENST00000625916 GIMAP7Q8NHV1 300 aa6.38□□□□□ -1.39
SCN1A-208ENST00000625916 MFSD14AQ96MC6 490 aa6.38□□□□□ -1.39
SCN1A-208ENST00000625916 OSMRQ99650 979 aa6.38□□□□□ -1.39
SCN1A-208ENST00000625916 SERPINA10Q9UK55 444 aa6.38□□□□□ -1.39
SCN1A-208ENST00000625916 SOX13Q9UN79 622 aa6.38□□□□□ -1.39
SCN1A-208ENST00000625916 ADAMTS4O75173 837 aa6.37□□□□□ -1.39
SCN1A-208ENST00000625916 MAP4P27816 1152 aaKnown RBP6.37□□□□□ -1.39
SCN1A-208ENST00000625916 EIF1AXP47813 144 aaKnown RBP6.37□□□□□ -1.39
SCN1A-208ENST00000625916 IKBKEQ14164 716 aa6.37□□□□□ -1.39
SCN1A-208ENST00000625916 NUTM2GQ5VZR2 741 aa6.37□□□□□ -1.39
SCN1A-208ENST00000625916 HGSNATQ68CP4 663 aa6.37□□□□□ -1.39
SCN1A-208ENST00000625916 BSNDQ8WZ55 320 aa6.37□□□□□ -1.39
SCN1A-208ENST00000625916 USP26Q9BXU7 913 aa6.37□□□□□ -1.39
SCN1A-208ENST00000625916 CHRDQ9H2X0 955 aa6.37□□□□□ -1.39
SCN1A-208ENST00000625916 ATG3Q9NT62 314 aa6.37□□□□□ -1.39
SCN1A-208ENST00000625916 MEGF11A6BM72 1044 aa6.36□□□□□ -1.39
SCN1A-208ENST00000625916 PHACTR2O75167 634 aa6.36□□□□□ -1.39
SCN1A-208ENST00000625916 EDN3P14138 238 aa6.36□□□□□ -1.39
SCN1A-208ENST00000625916 SGO2Q562F6 1265 aa6.36□□□□□ -1.39
SCN1A-208ENST00000625916 ALKBH2Q6NS38 261 aa6.36□□□□□ -1.39
SCN1A-208ENST00000625916 FBXL6Q8N531 539 aa6.36□□□□□ -1.39
SCN1A-208ENST00000625916 ASAP3Q8TDY4 903 aa6.36□□□□□ -1.39
SCN1A-208ENST00000625916 GTF3C2Q8WUA4 911 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-208ENST00000625916 NXPE3Q969Y0 559 aa6.36□□□□□ -1.39
SCN1A-208ENST00000625916 ZKSCAN3Q9BRR0 538 aa6.36□□□□□ -1.39
SCN1A-208ENST00000625916 POLIQ9UNA4 740 aa6.36□□□□□ -1.39
SCN1A-208ENST00000625916 SOX1O00570 391 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-208ENST00000625916 EREGO14944 169 aa6.35□□□□□ -1.39
SCN1A-208ENST00000625916 FMNL2Q96PY5 1086 aa6.35□□□□□ -1.39
SCN1A-208ENST00000625916 CYP4F12Q9HCS2 524 aa6.35□□□□□ -1.39
SCN1A-208ENST00000625916 PIM2Q9P1W9 311 aa6.35□□□□□ -1.39
SCN1A-208ENST00000625916 RNF114Q9Y508 228 aa6.35□□□□□ -1.39
SCN1A-208ENST00000625916 MTMR3Q13615 1198 aa6.34□□□□□ -1.39
SCN1A-208ENST00000625916 VN1R5Q7Z5H4 357 aa6.34□□□□□ -1.39
SCN1A-208ENST00000625916 SNX29Q8TEQ0 813 aa6.34□□□□□ -1.39
SCN1A-208ENST00000625916 LEMD3Q9Y2U8 911 aa6.34□□□□□ -1.39
SCN1A-208ENST00000625916 LOC100289279A0A1B0GTE1 492 aa6.33□□□□□ -1.4
SCN1A-208ENST00000625916 TNFRSF21O75509 655 aa6.33□□□□□ -1.4
SCN1A-208ENST00000625916 HOXA10P31260 410 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-208ENST00000625916 USP11P51784 963 aa6.33□□□□□ -1.4
SCN1A-208ENST00000625916 NFKBIBQ15653 356 aa6.33□□□□□ -1.4
SCN1A-208ENST00000625916 SMG8Q8ND04 991 aaKnown RBP6.33□□□□□ -1.4
SCN1A-208ENST00000625916 OSBPL1AQ9BXW6 950 aa6.33□□□□□ -1.4
SCN1A-208ENST00000625916 TMPRSS13Q9BYE2 586 aa6.33□□□□□ -1.4
SCN1A-208ENST00000625916 ANGEL1Q9UNK9 670 aaKnown RBP6.33□□□□□ -1.4
SCN1A-208ENST00000625916 FAM95CA0A1B0GW59 222 aa6.32□□□□□ -1.4
SCN1A-208ENST00000625916 F13BP05160 661 aa6.32□□□□□ -1.4
SCN1A-208ENST00000625916 YBX3P16989 372 aaKnown RBP eCLIP6.32□□□□□ -1.4
SCN1A-208ENST00000625916 USP5P45974 858 aa6.32□□□□□ -1.4
SCN1A-208ENST00000625916 GSTM4Q03013 218 aa6.32□□□□□ -1.4
SCN1A-208ENST00000625916 EHHADHQ08426 723 aa6.32□□□□□ -1.4
SCN1A-208ENST00000625916 PAOXQ6QHF9 649 aa6.32□□□□□ -1.4
SCN1A-208ENST00000625916 SOX17Q9H6I2 414 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-208ENST00000625916 SUGCTQ9HAC7 445 aa6.32□□□□□ -1.4
SCN1A-208ENST00000625916 FOXD3Q9UJU5 478 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-208ENST00000625916 TIAF1O95411 115 aa6.31□□□□□ -1.4
SCN1A-208ENST00000625916 ESRRAP11474 423 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-208ENST00000625916 DRD2P14416 443 aa6.31□□□□□ -1.4
SCN1A-208ENST00000625916 EXOSC6Q5RKV6 272 aaKnown RBP6.31□□□□□ -1.4
SCN1A-208ENST00000625916 BHLHE41Q9C0J9 482 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-208ENST00000625916 AMOTL2Q9Y2J4 779 aa6.31□□□□□ -1.4
SCN1A-208ENST00000625916 ARID3CA6NKF2 412 aa6.3□□□□□ -1.4
SCN1A-208ENST00000625916 FAM13AO94988 1023 aa6.3□□□□□ -1.4
SCN1A-208ENST00000625916 DLGAP3O95886 979 aa6.3□□□□□ -1.4
SCN1A-208ENST00000625916 FOSL1P15407 271 aa6.3□□□□□ -1.4
SCN1A-208ENST00000625916 SSFA2P28290 1259 aa6.3□□□□□ -1.4
SCN1A-208ENST00000625916 FBLIM1Q8WUP2 373 aa6.3□□□□□ -1.4
SCN1A-208ENST00000625916 METTL22Q9BUU2 404 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-208ENST00000625916 YIPF2Q9BWQ6 316 aa6.3□□□□□ -1.4
SCN1A-208ENST00000625916 KRTAP9-9Q9BYP9 154 aa6.3□□□□□ -1.4
SCN1A-208ENST00000625916 KRTAP9-4Q9BYQ2 154 aa6.3□□□□□ -1.4
SCN1A-208ENST00000625916 LATS2Q9NRM7 1088 aa6.3□□□□□ -1.4
SCN1A-208ENST00000625916 ADGRE2Q9UHX3 823 aa6.3□□□□□ -1.4
SCN1A-208ENST00000625916 MTMR7Q9Y216 660 aa6.3□□□□□ -1.4
SCN1A-208ENST00000625916 METTL12A8MUP2 240 aa6.29□□□□□ -1.4
SCN1A-208ENST00000625916 EIF4EBP3O60516 100 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-208ENST00000625916 CPSF6Q16630 551 aaKnown RBP eCLIP6.29□□□□□ -1.4
SCN1A-208ENST00000625916 CDPF1Q6NVV7 123 aa6.29□□□□□ -1.4
SCN1A-208ENST00000625916 ABI1Q8IZP0 508 aa6.29□□□□□ -1.4
SCN1A-208ENST00000625916 POLR3DP05423 398 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-208ENST00000625916 NPR3P17342 541 aa6.28□□□□□ -1.4
SCN1A-208ENST00000625916 SOX4Q06945 474 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-208ENST00000625916 PEAR1Q5VY43 1037 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-208ENST00000625916 C2CD4AQ8NCU7 369 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-208ENST00000625916 TBC1D32Q96NH3 1257 aa6.28□□□□□ -1.4
SCN1A-208ENST00000625916 CYP26A1O43174 497 aa6.27□□□□□ -1.41
SCN1A-208ENST00000625916 FZD6O60353 706 aa6.27□□□□□ -1.41
SCN1A-208ENST00000625916 ABL1P00519 1130 aa6.27□□□□□ -1.41
SCN1A-208ENST00000625916 FKBP4Q02790 459 aaKnown RBP eCLIP6.27□□□□□ -1.41
SCN1A-208ENST00000625916 SF3B2Q13435 895 aaKnown RBP6.27□□□□□ -1.41
SCN1A-208ENST00000625916 MSMPQ1L6U9 139 aa6.27□□□□□ -1.41
SCN1A-208ENST00000625916 SHISA5Q8N114 240 aa6.27□□□□□ -1.41
SCN1A-208ENST00000625916 ZFYVE28Q9HCC9 887 aa6.27□□□□□ -1.41
SCN1A-208ENST00000625916 CCDC39Q9UFE4 941 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms