RNA–Protein interactions for RNA: ENST00000624931.1

PCF11-207, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

Gene PCF11, Length 1,720 nt, Biotype TEC, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-207ENST00000624931 AKAP2Q9Y2D5 859 aa20.88■□□□□ 0.93
PCF11-207ENST00000624931 NRXN2Q9P2S2 1712 aa20.88■□□□□ 0.93
PCF11-207ENST00000624931 PDE8BO95263 885 aa20.87■□□□□ 0.93
PCF11-207ENST00000624931 MMP10P09238 476 aa20.87■□□□□ 0.93
PCF11-207ENST00000624931 ST5P78524 1137 aa20.87■□□□□ 0.93
PCF11-207ENST00000624931 PIBF1Q8WXW3 757 aa20.87■□□□□ 0.93
PCF11-207ENST00000624931 CHRNDQ07001 517 aa20.87■□□□□ 0.93
PCF11-207ENST00000624931 NLGN1Q8N2Q7 840 aa20.87■□□□□ 0.93
PCF11-207ENST00000624931 DNAJC2Q99543 621 aaKnown RBP20.87■□□□□ 0.93
PCF11-207ENST00000624931 IL25Q9H293 177 aa20.87■□□□□ 0.93
PCF11-207ENST00000624931 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.87■□□□□ 0.93
PCF11-207ENST00000624931 STX6O43752 255 aa20.86■□□□□ 0.93
PCF11-207ENST00000624931 UPF3BQ9BZI7 483 aaKnown RBP20.86■□□□□ 0.93
PCF11-207ENST00000624931 SH2B1Q9NRF2 756 aaPredicted RBP20.86■□□□□ 0.93
PCF11-207ENST00000624931 FAM13BQ9NYF5 915 aa20.86■□□□□ 0.93
PCF11-207ENST00000624931 SNX14Q9Y5W7 946 aa20.86■□□□□ 0.93
PCF11-207ENST00000624931 WTIPA6NIX2 430 aaPredicted RBP20.85■□□□□ 0.93
PCF11-207ENST00000624931 DDX46Q7L014 1031 aaKnown RBP20.85■□□□□ 0.93
PCF11-207ENST00000624931 MYRIPQ8NFW9 859 aa20.85■□□□□ 0.93
PCF11-207ENST00000624931 TM6SF1Q9BZW5 370 aa20.85■□□□□ 0.93
PCF11-207ENST00000624931 SMC3Q9UQE7 1217 aa20.85■□□□□ 0.93
PCF11-207ENST00000624931 GADD45BO75293 160 aaPredicted RBP20.84■□□□□ 0.93
PCF11-207ENST00000624931 FGFR2P21802 821 aa20.84■□□□□ 0.93
PCF11-207ENST00000624931 PUM3Q15397 648 aaKnown RBP20.84■□□□□ 0.93
PCF11-207ENST00000624931 GORABQ5T7V8 394 aa20.84■□□□□ 0.93
PCF11-207ENST00000624931 LSG1Q9H089 658 aaKnown RBP20.84■□□□□ 0.93
PCF11-207ENST00000624931 F13A1P00488 732 aa20.84■□□□□ 0.93
PCF11-207ENST00000624931 SCARF1Q14162 830 aa20.84■□□□□ 0.93
PCF11-207ENST00000624931 EVI5LQ96CN4 794 aa20.84■□□□□ 0.93
PCF11-207ENST00000624931 CHAMP1Q96JM3 812 aa20.84■□□□□ 0.93
PCF11-207ENST00000624931 HAUS7Q99871 368 aa20.84■□□□□ 0.93
PCF11-207ENST00000624931 BSDC1Q9NW68 430 aaPredicted RBP20.84■□□□□ 0.93
PCF11-207ENST00000624931 RPS8P62241 208 aaKnown RBP20.83■□□□□ 0.92
PCF11-207ENST00000624931 TTC39AQ5SRH9 613 aa20.83■□□□□ 0.92
PCF11-207ENST00000624931 NOL8Q76FK4 1167 aaKnown RBP20.83■□□□□ 0.92
PCF11-207ENST00000624931 SNRKQ9NRH2 765 aa20.83■□□□□ 0.92
PCF11-207ENST00000624931 MINPP1Q9UNW1 487 aa20.83■□□□□ 0.92
PCF11-207ENST00000624931 RBM10P98175 930 aaKnown RBP20.82■□□□□ 0.92
PCF11-207ENST00000624931 VPS53Q5VIR6 699 aa20.82■□□□□ 0.92
PCF11-207ENST00000624931 PI16Q6UXB8 463 aa20.82■□□□□ 0.92
PCF11-207ENST00000624931 KCNB2Q92953 911 aa20.82■□□□□ 0.92
PCF11-207ENST00000624931 FSD1Q9BTV5 496 aa20.82■□□□□ 0.92
PCF11-207ENST00000624931 COL11A2P13942 1736 aaPredicted RBP20.82■□□□□ 0.92
PCF11-207ENST00000624931 KDM4AO75164 1064 aa20.81■□□□□ 0.92
PCF11-207ENST00000624931 CHGBP05060 677 aa20.81■□□□□ 0.92
PCF11-207ENST00000624931 IFIT1P09914 478 aaKnown RBP20.81■□□□□ 0.92
PCF11-207ENST00000624931 GTF2F1P35269 517 aaKnown RBP eCLIP20.81■□□□□ 0.924e-24■■■■□ 21
PCF11-207ENST00000624931 PHKA1P46020 1223 aa20.81■□□□□ 0.92
PCF11-207ENST00000624931 LPIN2Q92539 896 aa20.81■□□□□ 0.92
PCF11-207ENST00000624931 RPGRQ92834 1020 aaKnown RBP20.81■□□□□ 0.92
PCF11-207ENST00000624931 SPTLC3Q9NUV7 552 aa20.81■□□□□ 0.92
PCF11-207ENST00000624931 PARP3Q9Y6F1 533 aa20.81■□□□□ 0.92
PCF11-207ENST00000624931 GOLIM4O00461 696 aa20.81■□□□□ 0.92
PCF11-207ENST00000624931 SLC5A1P13866 664 aa20.81■□□□□ 0.92
PCF11-207ENST00000624931 SYT1P21579 422 aa20.81■□□□□ 0.92
PCF11-207ENST00000624931 AK2P54819 239 aa20.81■□□□□ 0.92
PCF11-207ENST00000624931 GRAPQ13588 217 aa20.81■□□□□ 0.92
PCF11-207ENST00000624931 NOLC1Q14978 699 aaKnown RBP eCLIP20.81■□□□□ 0.921e-11■□□□□ 9.8
PCF11-207ENST00000624931 CRY2Q49AN0 593 aa20.81■□□□□ 0.92
PCF11-207ENST00000624931 GRAPLQ8TC17 118 aaPredicted RBP20.81■□□□□ 0.92
PCF11-207ENST00000624931 GOLGA6L6A8MZA4 724 aa20.8■□□□□ 0.92
PCF11-207ENST00000624931 ADCY5O95622 1261 aa20.8■□□□□ 0.92
PCF11-207ENST00000624931 CCDC158Q5M9N0 1113 aa20.8■□□□□ 0.92
PCF11-207ENST00000624931 DNTTIP2Q5QJE6 756 aaKnown RBP20.79■□□□□ 0.92
PCF11-207ENST00000624931 CWC27Q6UX04 472 aaKnown RBP20.79■□□□□ 0.92
PCF11-207ENST00000624931 DIAPH3Q9NSV4 1193 aa20.79■□□□□ 0.92
PCF11-207ENST00000624931 USP25Q9UHP3 1055 aa20.79■□□□□ 0.92
PCF11-207ENST00000624931 AKAP11Q9UKA4 1901 aa20.79■□□□□ 0.92
PCF11-207ENST00000624931 HIP1O00291 1037 aa20.78■□□□□ 0.92
PCF11-207ENST00000624931 CCDC102BQ68D86 513 aa20.78■□□□□ 0.92
PCF11-207ENST00000624931 FAM227BQ96M60 508 aa20.78■□□□□ 0.92
PCF11-207ENST00000624931 PAG1Q9NWQ8 432 aa20.78■□□□□ 0.92
PCF11-207ENST00000624931 CNPY2Q9Y2B0 182 aa20.78■□□□□ 0.92
PCF11-207ENST00000624931 KLRK1P26718 216 aa20.78■□□□□ 0.92
PCF11-207ENST00000624931 MCAMP43121 646 aa20.78■□□□□ 0.92
PCF11-207ENST00000624931 NMIQ13287 307 aaPredicted RBP20.78■□□□□ 0.92
PCF11-207ENST00000624931 RUFY3Q7L099 469 aa20.78■□□□□ 0.92
PCF11-207ENST00000624931 SMAP1Q8IYB5 467 aaPredicted RBP20.78■□□□□ 0.92
PCF11-207ENST00000624931 FUCA2Q9BTY2 467 aa20.78■□□□□ 0.92
PCF11-207ENST00000624931 GDPD2Q9HCC8 539 aa20.78■□□□□ 0.92
PCF11-207ENST00000624931 ZAP70P43403 619 aa20.77■□□□□ 0.92
PCF11-207ENST00000624931 FKBP4Q02790 459 aaKnown RBP eCLIP20.77■□□□□ 0.92
PCF11-207ENST00000624931 SLFNL1Q499Z3 407 aa20.77■□□□□ 0.92
PCF11-207ENST00000624931 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.77■□□□□ 0.92
PCF11-207ENST00000624931 A0A0D9SFI3 127 aa20.76■□□□□ 0.91
PCF11-207ENST00000624931 BRIP1Q9BX63 1249 aa20.76■□□□□ 0.91
PCF11-207ENST00000624931 ZSWIM6Q9HCJ5 1215 aa20.76■□□□□ 0.91
PCF11-207ENST00000624931 PDRG1Q9NUG6 133 aa20.76■□□□□ 0.91
PCF11-207ENST00000624931 CYP46A1Q9Y6A2 500 aa20.76■□□□□ 0.91
PCF11-207ENST00000624931 CCDC171Q6TFL3 1326 aa20.76■□□□□ 0.91
PCF11-207ENST00000624931 KLRG2A4D1S0 409 aaPredicted RBP20.75■□□□□ 0.91
PCF11-207ENST00000624931 PDCP20941 246 aa20.75■□□□□ 0.91
PCF11-207ENST00000624931 BCAMP50895 628 aa20.75■□□□□ 0.91
PCF11-207ENST00000624931 RBM17Q96I25 401 aaKnown RBP20.75■□□□□ 0.91
PCF11-207ENST00000624931 ARID4AP29374 1257 aaPredicted RBP20.75■□□□□ 0.91
PCF11-207ENST00000624931 GYG1P46976 350 aa20.75■□□□□ 0.91
PCF11-207ENST00000624931 CCDC125Q86Z20 511 aa20.75■□□□□ 0.91
PCF11-207ENST00000624931 KBTBD3Q8NAB2 608 aa20.75■□□□□ 0.91
PCF11-207ENST00000624931 CCDC192P0DO97 292 aa20.74■□□□□ 0.91
PCF11-207ENST00000624931 ZKSCAN1P17029 563 aaPredicted RBP20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms