RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 GPAA1O43292 621 aa16.95■□□□□ 0.3
SHROOM1-208ENST00000617339 PCCAP05165 728 aaPredicted RBP16.95■□□□□ 0.3
SHROOM1-208ENST00000617339 SIK1P57059 783 aa16.95■□□□□ 0.3
SHROOM1-208ENST00000617339 NKX1-1Q15270 411 aaPredicted RBP16.95■□□□□ 0.3
SHROOM1-208ENST00000617339 DCAF8Q5TAQ9 597 aa16.95■□□□□ 0.3
SHROOM1-208ENST00000617339 USP21Q9UK80 565 aa16.95■□□□□ 0.3
SHROOM1-208ENST00000617339 LIG1P18858 919 aa16.95■□□□□ 0.3
SHROOM1-208ENST00000617339 TEX13AQ9BXU3 409 aaPredicted RBP16.95■□□□□ 0.3
SHROOM1-208ENST00000617339 AP5Z1O43299 807 aa16.94■□□□□ 0.3
SHROOM1-208ENST00000617339 ZPR1O75312 459 aa16.94■□□□□ 0.3
SHROOM1-208ENST00000617339 KRT85P78386 507 aa16.94■□□□□ 0.3
SHROOM1-208ENST00000617339 KCNF1Q9H3M0 494 aa16.94■□□□□ 0.3
SHROOM1-208ENST00000617339 UBN2Q6ZU65 1347 aa16.94■□□□□ 0.3
SHROOM1-208ENST00000617339 ZNF142P52746 1687 aaPredicted RBP16.94■□□□□ 0.3
SHROOM1-208ENST00000617339 ITPK1Q13572 414 aa16.94■□□□□ 0.3
SHROOM1-208ENST00000617339 NFXL1Q6ZNB6 911 aa16.94■□□□□ 0.3
SHROOM1-208ENST00000617339 PTGS1P23219 599 aa16.94■□□□□ 0.3
SHROOM1-208ENST00000617339 GTF2F1P35269 517 aaKnown RBP eCLIP16.94■□□□□ 0.3
SHROOM1-208ENST00000617339 CMTR1Q8N1G2 835 aaKnown RBP16.94■□□□□ 0.3
SHROOM1-208ENST00000617339 KDM3BQ7LBC6 1761 aa16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 TCHHQ07283 1943 aa16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 ZNF213O14771 459 aa16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 ANKRD1Q15327 319 aa16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 MAGEB6Q8N7X4 407 aa16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 PIH1D3Q9NQM4 214 aaKnown RBP16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 LRP2BPQ9P2M1 347 aa16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 CACNA1FO60840 1977 aa16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 UTRNP46939 3433 aa16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 CCDC102BQ68D86 513 aa16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 DHX32Q7L7V1 743 aaKnown RBP16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 MICU3Q86XE3 530 aa16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 TM6SF1Q9BZW5 370 aa16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 DACT1Q9NYF0 836 aa16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 TRPM3Q9HCF6 1732 aaPredicted RBP16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 KLF18A0A0U1RQI7 1052 aa16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 MINDY4BA8MYZ0 360 aa16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 GNL2Q13823 731 aaKnown RBP16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 IMMTQ16891 758 aaKnown RBP16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 AIDAQ96BJ3 306 aa16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 V9GYY5 206 aaPredicted RBP16.93■□□□□ 0.3
SHROOM1-208ENST00000617339 LMO7Q8WWI1 1683 aa16.92■□□□□ 0.3
SHROOM1-208ENST00000617339 ERICH4A6NGS2 130 aa16.92■□□□□ 0.3
SHROOM1-208ENST00000617339 PRKAB2O43741 272 aa16.92■□□□□ 0.3
SHROOM1-208ENST00000617339 KRT32Q14532 448 aa16.92■□□□□ 0.3
SHROOM1-208ENST00000617339 UVSSAQ2YD98 709 aa16.92■□□□□ 0.3
SHROOM1-208ENST00000617339 ARMT1Q9H993 441 aa16.92■□□□□ 0.3
SHROOM1-208ENST00000617339 PTPDC1A2A3K4 754 aa16.92■□□□□ 0.3
SHROOM1-208ENST00000617339 B4E1Z4 1266 aa16.92■□□□□ 0.3
SHROOM1-208ENST00000617339 CTDSPL2Q05D32 466 aa16.92■□□□□ 0.3
SHROOM1-208ENST00000617339 ZMYM1Q5SVZ6 1142 aa16.92■□□□□ 0.3
SHROOM1-208ENST00000617339 ZNF532Q9HCE3 1301 aa16.92■□□□□ 0.3
SHROOM1-208ENST00000617339 GOLGA8BA8MQT2 603 aa16.91■□□□□ 0.3
SHROOM1-208ENST00000617339 KIAA1524Q8TCG1 905 aa16.91■□□□□ 0.3
SHROOM1-208ENST00000617339 TRERF1Q96PN7 1200 aa16.91■□□□□ 0.3
SHROOM1-208ENST00000617339 GNPATO15228 680 aa16.91■□□□□ 0.3
SHROOM1-208ENST00000617339 GYG1P46976 350 aa16.91■□□□□ 0.3
SHROOM1-208ENST00000617339 LRMPQ12912 555 aa16.91■□□□□ 0.3
SHROOM1-208ENST00000617339 TRDNQ13061 729 aa16.91■□□□□ 0.3
SHROOM1-208ENST00000617339 SLC51AQ86UW1 340 aa16.91■□□□□ 0.3
SHROOM1-208ENST00000617339 NKX2-3Q8TAU0 364 aa16.91■□□□□ 0.3
SHROOM1-208ENST00000617339 AIFM3Q96NN9 605 aa16.91■□□□□ 0.3
SHROOM1-208ENST00000617339 HMG20BQ9P0W2 317 aa16.91■□□□□ 0.3
SHROOM1-208ENST00000617339 PPP1R1BQ9UD71 204 aaPredicted RBP16.91■□□□□ 0.3
SHROOM1-208ENST00000617339 SRP68Q9UHB9 627 aaKnown RBP16.91■□□□□ 0.3
SHROOM1-208ENST00000617339 PRC1O43663 620 aa16.91■□□□□ 0.3
SHROOM1-208ENST00000617339 ISM2Q6H9L7 571 aa16.91■□□□□ 0.3
SHROOM1-208ENST00000617339 PLCD3Q8N3E9 789 aa16.91■□□□□ 0.3
SHROOM1-208ENST00000617339 SPTLC3Q9NUV7 552 aa16.91■□□□□ 0.3
SHROOM1-208ENST00000617339 CCDC87Q9NVE4 849 aa16.91■□□□□ 0.3
SHROOM1-208ENST00000617339 MED23Q9ULK4 1368 aa16.9■□□□□ 0.3
SHROOM1-208ENST00000617339 SMIM22K7EJ46 135 aa16.9■□□□□ 0.3
SHROOM1-208ENST00000617339 IGHMBP2P38935 993 aaKnown RBP16.9■□□□□ 0.3
SHROOM1-208ENST00000617339 UBE2HP62256 183 aa16.9■□□□□ 0.3
SHROOM1-208ENST00000617339 RAI14Q9P0K7 980 aa16.9■□□□□ 0.3
SHROOM1-208ENST00000617339 C5P01031 1676 aa16.9■□□□□ 0.3
SHROOM1-208ENST00000617339 PDE8AO60658 829 aa16.9■□□□□ 0.3
SHROOM1-208ENST00000617339 ME1P48163 572 aa16.9■□□□□ 0.3
SHROOM1-208ENST00000617339 SF3A1Q15459 793 aaKnown RBP16.9■□□□□ 0.3
SHROOM1-208ENST00000617339 UTP14AQ9BVJ6 771 aaKnown RBP16.9■□□□□ 0.3
SHROOM1-208ENST00000617339 RIPOR2Q9Y4F9 1068 aa16.9■□□□□ 0.3
SHROOM1-208ENST00000617339 UBE2Q2LH0YL09 131 aa16.89■□□□□ 0.29
SHROOM1-208ENST00000617339 PDE8BO95263 885 aa16.89■□□□□ 0.29
SHROOM1-208ENST00000617339 PDCP20941 246 aa16.89■□□□□ 0.29
SHROOM1-208ENST00000617339 PHKBQ93100 1093 aa16.89■□□□□ 0.29
SHROOM1-208ENST00000617339 GTF3C6Q969F1 213 aa16.89■□□□□ 0.29
SHROOM1-208ENST00000617339 SENP2Q9HC62 589 aa16.89■□□□□ 0.29
SHROOM1-208ENST00000617339 DCCP43146 1447 aa16.89■□□□□ 0.29
SHROOM1-208ENST00000617339 SH3TC1Q8TE82 1336 aa16.89■□□□□ 0.29
SHROOM1-208ENST00000617339 ADD1P35611 737 aaKnown RBP16.89■□□□□ 0.29
SHROOM1-208ENST00000617339 RAD21O60216 631 aa16.89■□□□□ 0.29
SHROOM1-208ENST00000617339 TFCP2L1Q9NZI6 479 aa16.89■□□□□ 0.29
SHROOM1-208ENST00000617339 PRDM1O75626 825 aa16.88■□□□□ 0.29
SHROOM1-208ENST00000617339 MBD4O95243 580 aa16.88■□□□□ 0.29
SHROOM1-208ENST00000617339 NCBP1Q09161 790 aaKnown RBP16.88■□□□□ 0.29
SHROOM1-208ENST00000617339 NUP133Q8WUM0 1156 aa16.88■□□□□ 0.29
SHROOM1-208ENST00000617339 hCG_1642624A0A1W2PR95 340 aa16.88■□□□□ 0.29
SHROOM1-208ENST00000617339 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.88■□□□□ 0.29
SHROOM1-208ENST00000617339 HELLSQ9NRZ9 838 aa16.88■□□□□ 0.29
SHROOM1-208ENST00000617339 TDO2P48775 406 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms