RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 PRMT6Q96LA8 375 aaPredicted RBP7.12□□□□□ -1.27
CPNE3-208ENST00000614678 HSP90B1P14625 803 aaKnown RBP7.12□□□□□ -1.27
CPNE3-208ENST00000614678 TNIP1Q15025 636 aa7.12□□□□□ -1.27
CPNE3-208ENST00000614678 TBC1D9Q6ZT07 1266 aa7.12□□□□□ -1.27
CPNE3-208ENST00000614678 PODNQ7Z5L7 613 aa7.12□□□□□ -1.27
CPNE3-208ENST00000614678 ANKRD2Q9GZV1 360 aa7.12□□□□□ -1.27
CPNE3-208ENST00000614678 MYOZ2Q9NPC6 264 aa7.12□□□□□ -1.27
CPNE3-208ENST00000614678 GNAI2P04899 355 aa7.11□□□□□ -1.27
CPNE3-208ENST00000614678 APLP1P51693 650 aa7.11□□□□□ -1.27
CPNE3-208ENST00000614678 CEP85Q6P2H3 762 aa7.11□□□□□ -1.27
CPNE3-208ENST00000614678 COA1Q9GZY4 146 aa7.11□□□□□ -1.27
CPNE3-208ENST00000614678 MYO5AQ9Y4I1 1855 aaKnown RBP7.11□□□□□ -1.27
CPNE3-208ENST00000614678 IPO8O15397 1037 aaKnown RBP7.11□□□□□ -1.27
CPNE3-208ENST00000614678 USP17L8P0C7I0 530 aa7.11□□□□□ -1.27
CPNE3-208ENST00000614678 PRDX5P30044 214 aa7.11□□□□□ -1.27
CPNE3-208ENST00000614678 HIBADHP31937 336 aaKnown RBP7.11□□□□□ -1.27
CPNE3-208ENST00000614678 DIXDC1Q155Q3 683 aa7.11□□□□□ -1.27
CPNE3-208ENST00000614678 IL1R1P14778 569 aa7.11□□□□□ -1.27
CPNE3-208ENST00000614678 SLFNL1Q499Z3 407 aa7.11□□□□□ -1.27
CPNE3-208ENST00000614678 MFSD14BQ5SR56 506 aa7.11□□□□□ -1.27
CPNE3-208ENST00000614678 FBXO33Q7Z6M2 555 aa7.11□□□□□ -1.27
CPNE3-208ENST00000614678 TDRD7Q8NHU6 1098 aaKnown RBP7.11□□□□□ -1.27
CPNE3-208ENST00000614678 ZNF384Q8TF68 577 aa7.11□□□□□ -1.27
CPNE3-208ENST00000614678 IL1RAPL2Q9NP60 686 aa7.11□□□□□ -1.27
CPNE3-208ENST00000614678 SNRKQ9NRH2 765 aa7.11□□□□□ -1.27
CPNE3-208ENST00000614678 CYP4F22Q6NT55 531 aa7.1□□□□□ -1.27
CPNE3-208ENST00000614678 TSKSQ9UJT2 592 aa7.1□□□□□ -1.27
CPNE3-208ENST00000614678 A0A1B0GUL7 405 aa7.1□□□□□ -1.27
CPNE3-208ENST00000614678 H7C1D1 291 aa7.1□□□□□ -1.27
CPNE3-208ENST00000614678 CELF2O95319 508 aaKnown RBP7.1□□□□□ -1.27
CPNE3-208ENST00000614678 GRIPAP1Q4V328 841 aa7.1□□□□□ -1.27
CPNE3-208ENST00000614678 STRIP1Q5VSL9 837 aa7.1□□□□□ -1.27
CPNE3-208ENST00000614678 KRT26Q7Z3Y9 468 aa7.1□□□□□ -1.27
CPNE3-208ENST00000614678 NEUROD6Q96NK8 337 aa7.1□□□□□ -1.27
CPNE3-208ENST00000614678 CCDC8Q9H0W5 538 aaPredicted RBP7.1□□□□□ -1.27
CPNE3-208ENST00000614678 COPRSQ9NQ92 184 aa7.1□□□□□ -1.27
CPNE3-208ENST00000614678 SMARCA5O60264 1052 aaPredicted RBP7.1□□□□□ -1.27
CPNE3-208ENST00000614678 AOC2O75106 756 aa7.1□□□□□ -1.27
CPNE3-208ENST00000614678 FSTL1Q12841 308 aa7.1□□□□□ -1.27
CPNE3-208ENST00000614678 MVPQ14764 893 aaKnown RBP7.1□□□□□ -1.27
CPNE3-208ENST00000614678 ATP2B3Q16720 1220 aa7.1□□□□□ -1.27
CPNE3-208ENST00000614678 DPF2Q92785 391 aa7.1□□□□□ -1.27
CPNE3-208ENST00000614678 DBNDD2Q9BQY9 259 aa7.1□□□□□ -1.27
CPNE3-208ENST00000614678 VPS33BQ9H267 617 aa7.1□□□□□ -1.27
CPNE3-208ENST00000614678 MROH5Q6ZUA9 1318 aa7.1□□□□□ -1.27
CPNE3-208ENST00000614678 MYH13Q9UKX3 1938 aa7.1□□□□□ -1.27
CPNE3-208ENST00000614678 SURF6O75683 361 aaKnown RBP7.09□□□□□ -1.27
CPNE3-208ENST00000614678 GNAI3P08754 354 aa7.09□□□□□ -1.27
CPNE3-208ENST00000614678 ZNF280AP59817 542 aaPredicted RBP7.09□□□□□ -1.27
CPNE3-208ENST00000614678 RASGRF1Q13972 1273 aa7.09□□□□□ -1.27
CPNE3-208ENST00000614678 UBE4AQ14139 1066 aa7.09□□□□□ -1.27
CPNE3-208ENST00000614678 POLA2Q14181 598 aa7.09□□□□□ -1.27
CPNE3-208ENST00000614678 TSHZ3Q63HK5 1081 aa7.09□□□□□ -1.27
CPNE3-208ENST00000614678 USP50Q70EL3 339 aaPredicted RBP7.09□□□□□ -1.27
CPNE3-208ENST00000614678 PNMA8AQ86V59 439 aaPredicted RBP7.09□□□□□ -1.27
CPNE3-208ENST00000614678 TDRD3Q9H7E2 651 aaKnown RBP7.09□□□□□ -1.27
CPNE3-208ENST00000614678 ZBTB40Q9NUA8 1239 aa7.09□□□□□ -1.27
CPNE3-208ENST00000614678 VEGFBP49765 207 aa7.09□□□□□ -1.27
CPNE3-208ENST00000614678 ATP8B2P98198 1209 aa7.09□□□□□ -1.27
CPNE3-208ENST00000614678 MKRN3Q13064 507 aaKnown RBP7.09□□□□□ -1.27
CPNE3-208ENST00000614678 PUM3Q15397 648 aaKnown RBP7.09□□□□□ -1.27
CPNE3-208ENST00000614678 CCDC102BQ68D86 513 aa7.09□□□□□ -1.27
CPNE3-208ENST00000614678 XAGE2Q96GT9 111 aa7.09□□□□□ -1.27
CPNE3-208ENST00000614678 PCDHB15Q9Y5E8 787 aa7.09□□□□□ -1.27
CPNE3-208ENST00000614678 FRAT2O75474 233 aaPredicted RBP7.09□□□□□ -1.27
CPNE3-208ENST00000614678 MTX1Q13505 466 aa7.09□□□□□ -1.27
CPNE3-208ENST00000614678 CFAP100Q494V2 611 aa7.09□□□□□ -1.27
CPNE3-208ENST00000614678 VPS37DQ86XT2 251 aa7.09□□□□□ -1.27
CPNE3-208ENST00000614678 EAF2Q96CJ1 260 aaPredicted RBP7.09□□□□□ -1.27
CPNE3-208ENST00000614678 EDC3Q96F86 508 aaKnown RBP7.09□□□□□ -1.27
CPNE3-208ENST00000614678 ABT1Q9ULW3 272 aaKnown RBP7.09□□□□□ -1.27
CPNE3-208ENST00000614678 TTF2Q9UNY4 1162 aaKnown RBP7.09□□□□□ -1.27
CPNE3-208ENST00000614678 RBM5P52756 815 aaKnown RBP eCLIP7.09□□□□□ -1.28
CPNE3-208ENST00000614678 ZNF804AQ7Z570 1209 aa7.09□□□□□ -1.28
CPNE3-208ENST00000614678 SSH3Q8TE77 659 aa7.09□□□□□ -1.28
CPNE3-208ENST00000614678 CRBNQ96SW2 442 aa7.09□□□□□ -1.28
CPNE3-208ENST00000614678 CEP126Q9P2H0 1117 aa7.09□□□□□ -1.28
CPNE3-208ENST00000614678 PAXIP1Q6ZW49 1069 aaPredicted RBP7.08□□□□□ -1.28
CPNE3-208ENST00000614678 ZFPM1Q8IX07 1006 aa7.08□□□□□ -1.28
CPNE3-208ENST00000614678 PGAP2Q9UHJ9 254 aa7.08□□□□□ -1.28
CPNE3-208ENST00000614678 C15orf52Q6ZUT6 534 aaKnown RBP7.08□□□□□ -1.28
CPNE3-208ENST00000614678 AGBL3Q8NEM8 1001 aa7.08□□□□□ -1.28
CPNE3-208ENST00000614678 MCAMP43121 646 aa7.08□□□□□ -1.28
CPNE3-208ENST00000614678 LPIN2Q92539 896 aa7.08□□□□□ -1.28
CPNE3-208ENST00000614678 KLRG1Q96E93 195 aa7.08□□□□□ -1.28
CPNE3-208ENST00000614678 ANTXR1Q9H6X2 564 aa7.08□□□□□ -1.28
CPNE3-208ENST00000614678 VEZTQ9HBM0 779 aa7.08□□□□□ -1.28
CPNE3-208ENST00000614678 DBNLQ9UJU6 430 aaKnown RBP7.08□□□□□ -1.28
CPNE3-208ENST00000614678 SUPT16HQ9Y5B9 1047 aaKnown RBP7.08□□□□□ -1.28
CPNE3-208ENST00000614678 TMEM88BA6NKF7 163 aa7.07□□□□□ -1.28
CPNE3-208ENST00000614678 TCP10L2B9ZVM9 353 aa7.07□□□□□ -1.28
CPNE3-208ENST00000614678 SAPCD2Q86UD0 394 aa7.07□□□□□ -1.28
CPNE3-208ENST00000614678 CDCA5Q96FF9 252 aa7.07□□□□□ -1.28
CPNE3-208ENST00000614678 ZBED3Q96IU2 234 aaPredicted RBP7.07□□□□□ -1.28
CPNE3-208ENST00000614678 SSC5DA1L4H1 1573 aa7.07□□□□□ -1.28
CPNE3-208ENST00000614678 UBE2Q2LH0YL09 131 aa7.07□□□□□ -1.28
CPNE3-208ENST00000614678 IL15P40933 162 aaPredicted RBP7.07□□□□□ -1.28
CPNE3-208ENST00000614678 NFIAQ12857 509 aa7.07□□□□□ -1.28
CPNE3-208ENST00000614678 TMEM39BQ9GZU3 492 aa7.07□□□□□ -1.28
CPNE3-208ENST00000614678 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms