RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 N4BP2L2Q92802 583 aaPredicted RBP9.86□□□□□ -0.83
TTC28-208ENST00000612946 MYL5Q02045 173 aa9.86□□□□□ -0.83
TTC28-208ENST00000612946 DHX37Q8IY37 1157 aaKnown RBP9.86□□□□□ -0.83
TTC28-208ENST00000612946 C9orf84Q5VXU9 1444 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 AOPEPQ8N6M6 819 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 RAB17Q9H0T7 212 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 ZNF569Q5MCW4 686 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 PRPF40BQ6NWY9 871 aaKnown RBP9.85□□□□□ -0.83
TTC28-208ENST00000612946 ZC3H15Q8WU90 426 aaKnown RBP9.85□□□□□ -0.83
TTC28-208ENST00000612946 MATR3P43243 847 aaKnown RBP eCLIP9.85□□□□□ -0.831e-6■■■□□ 16.4
TTC28-208ENST00000612946 PRR16Q569H4 304 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 NOX5Q96PH1 765 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 TPX2Q9ULW0 747 aaKnown RBP9.85□□□□□ -0.83
TTC28-208ENST00000612946 CFAP221Q4G0U5 840 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 CFAP65Q6ZU64 1925 aaKnown RBP9.85□□□□□ -0.83
TTC28-208ENST00000612946 CCDC151A5D8V7 595 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 PHACTR2O75167 634 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 FERMT3Q86UX7 667 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 SCINQ9Y6U3 715 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 PPP1R21Q6ZMI0 780 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 RUFY3Q7L099 469 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 TRIM47Q96LD4 638 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 FAM210AQ96ND0 272 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 TRAK1Q9UPV9 953 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 SATB1Q01826 763 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 DENND2CQ68D51 928 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 NME8Q8N427 588 aa9.85□□□□□ -0.83
TTC28-208ENST00000612946 RHOXF2BP0C7M4 288 aa9.84□□□□□ -0.83
TTC28-208ENST00000612946 TADA2BQ86TJ2 420 aa9.84□□□□□ -0.83
TTC28-208ENST00000612946 VSIG1Q86XK7 387 aa9.84□□□□□ -0.83
TTC28-208ENST00000612946 RHOXF2Q9BQY4 288 aa9.84□□□□□ -0.83
TTC28-208ENST00000612946 KDM5AP29375 1690 aaKnown RBP9.84□□□□□ -0.83
TTC28-208ENST00000612946 RPRD2Q5VT52 1461 aaKnown RBP9.84□□□□□ -0.83
TTC28-208ENST00000612946 PSDA5PKW4 1024 aaPredicted RBP9.84□□□□□ -0.83
TTC28-208ENST00000612946 OLFM3Q96PB7 478 aa9.84□□□□□ -0.83
TTC28-208ENST00000612946 CNPY2Q9Y2B0 182 aa9.84□□□□□ -0.83
TTC28-208ENST00000612946 ESRRGP62508 458 aa9.84□□□□□ -0.83
TTC28-208ENST00000612946 RUBCNQ92622 972 aa9.84□□□□□ -0.83
TTC28-208ENST00000612946 VPS52Q8N1B4 723 aa9.84□□□□□ -0.83
TTC28-208ENST00000612946 UBL4BQ8N7F7 174 aa9.84□□□□□ -0.83
TTC28-208ENST00000612946 CCDC122Q5T0U0 273 aa9.84□□□□□ -0.83
TTC28-208ENST00000612946 TSC1Q92574 1164 aa9.84□□□□□ -0.83
TTC28-208ENST00000612946 PODNQ7Z5L7 613 aa9.84□□□□□ -0.83
TTC28-208ENST00000612946 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.84□□□□□ -0.83
TTC28-208ENST00000612946 PRPF4BQ13523 1007 aaKnown RBP9.84□□□□□ -0.83
TTC28-208ENST00000612946 UBLCP1Q8WVY7 318 aaPredicted RBP9.84□□□□□ -0.83
TTC28-208ENST00000612946 MRFAP1L1Q96HT8 127 aa9.84□□□□□ -0.83
TTC28-208ENST00000612946 LMNB1P20700 586 aa9.84□□□□□ -0.83
TTC28-208ENST00000612946 LLPHQ9BRT6 129 aaKnown RBP9.84□□□□□ -0.83
TTC28-208ENST00000612946 C1orf115Q9H7X2 142 aa9.84□□□□□ -0.83
TTC28-208ENST00000612946 IDEP14735 1019 aa9.84□□□□□ -0.83
TTC28-208ENST00000612946 ERMNQ8TAM6 284 aa9.84□□□□□ -0.83
TTC28-208ENST00000612946 ZNF830Q96NB3 372 aaPredicted RBP9.84□□□□□ -0.83
TTC28-208ENST00000612946 SLC12A7Q9Y666 1083 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 SLC4A2P04920 1241 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 EHMT1Q9H9B1 1298 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 SUN1O94901 812 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 E7EVH7 732 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 SEL1L2Q5TEA6 688 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 MPHOSPH6Q99547 160 aaKnown RBP9.83□□□□□ -0.84
TTC28-208ENST00000612946 CC2D2AQ9P2K1 1620 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 NUP160Q12769 1436 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 ATP5HO75947 161 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 ARHGEF2Q92974 986 aaKnown RBP9.83□□□□□ -0.84
TTC28-208ENST00000612946 RUNDC3BQ96NL0 473 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 DNAJC25Q9H1X3 360 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 POLE3Q9NRF9 147 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 BAIAP2L1Q9UHR4 511 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 PRKAR2BP31323 418 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 TERF2Q15554 542 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 NFE2L2Q16236 605 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 RASIP1Q5U651 963 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 HPDP32754 393 aaPredicted RBP9.83□□□□□ -0.84
TTC28-208ENST00000612946 CLSTN2Q9H4D0 955 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 DACT1Q9NYF0 836 aa9.83□□□□□ -0.84
TTC28-208ENST00000612946 SSBP05455 408 aaKnown RBP eCLIP9.82□□□□□ -0.84
TTC28-208ENST00000612946 LMNB2Q03252 620 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 GABPB2Q8TAK5 448 aaPredicted RBP9.82□□□□□ -0.84
TTC28-208ENST00000612946 KLHDC4Q8TBB5 520 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 CCDC194A0A1B0GVG4 234 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 HDGFL1Q5TGJ6 251 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 SIL1Q9H173 461 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 NOP53Q9NZM5 478 aaKnown RBP9.82□□□□□ -0.84
TTC28-208ENST00000612946 TFIP11Q9UBB9 837 aaKnown RBP9.82□□□□□ -0.84
TTC28-208ENST00000612946 CTTNBP2Q8WZ74 1663 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 TMEM232C9JQI7 657 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 PCYT1AP49585 367 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 NRBF2Q96F24 287 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 TRIM37O94972 964 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 PEX19P40855 299 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 ALS2CLQ60I27 953 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 NEK11Q8NG66 645 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 ANGPTL2Q9UKU9 493 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 ST13P4Q8IZP2 240 aaPredicted RBP9.82□□□□□ -0.84
TTC28-208ENST00000612946 CNPY4Q8N129 248 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 ADGBQ8N7X0 1667 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 LGSNQ5TDP6 509 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 KIF6Q6ZMV9 814 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 CCDC197Q8NCU1 140 aa9.82□□□□□ -0.84
TTC28-208ENST00000612946 PSMC4P43686 418 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms