RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 ANKRD18BA2A2Z9 1011 aa6.6□□□□□ -1.35
VRK3-226ENST00000602029 MANSC4A6NHS7 340 aaPredicted RBP6.6□□□□□ -1.35
VRK3-226ENST00000602029 WTIPA6NIX2 430 aaPredicted RBP6.6□□□□□ -1.35
VRK3-226ENST00000602029 FRAT2O75474 233 aaPredicted RBP6.6□□□□□ -1.35
VRK3-226ENST00000602029 WDHD1O75717 1129 aaPredicted RBP6.6□□□□□ -1.35
VRK3-226ENST00000602029 ECM2O94769 699 aaPredicted RBP6.6□□□□□ -1.35
VRK3-226ENST00000602029 SLC4A2P04920 1241 aa6.6□□□□□ -1.35
VRK3-226ENST00000602029 ITGA6P23229 1130 aa6.6□□□□□ -1.35
VRK3-226ENST00000602029 IREB2P48200 963 aaKnown RBP6.6□□□□□ -1.35
VRK3-226ENST00000602029 DACT2Q5SW24 774 aa6.6□□□□□ -1.35
VRK3-226ENST00000602029 STRIP1Q5VSL9 837 aa6.6□□□□□ -1.35
VRK3-226ENST00000602029 HELBQ8NG08 1087 aaPredicted RBP6.6□□□□□ -1.35
VRK3-226ENST00000602029 TTLL11Q8NHH1 800 aa6.6□□□□□ -1.35
VRK3-226ENST00000602029 OTUD5Q96G74 571 aa6.6□□□□□ -1.35
VRK3-226ENST00000602029 TMEM106CQ9BVX2 250 aa6.6□□□□□ -1.35
VRK3-226ENST00000602029 DEFB129Q9H1M3 183 aa6.6□□□□□ -1.35
VRK3-226ENST00000602029 LEMD3Q9Y2U8 911 aa6.6□□□□□ -1.35
VRK3-226ENST00000602029 SALL2Q9Y467 1007 aaPredicted RBP6.6□□□□□ -1.35
VRK3-226ENST00000602029 COL4A1P02462 1669 aa6.59□□□□□ -1.35
VRK3-226ENST00000602029 NEURL1BA8MQ27 555 aa6.59□□□□□ -1.35
VRK3-226ENST00000602029 TAF5LO75529 589 aa6.59□□□□□ -1.35
VRK3-226ENST00000602029 KLRK1P26718 216 aa6.59□□□□□ -1.35
VRK3-226ENST00000602029 CHRNDQ07001 517 aa6.59□□□□□ -1.35
VRK3-226ENST00000602029 IFIT5Q13325 482 aaKnown RBP6.59□□□□□ -1.35
VRK3-226ENST00000602029 SLC4A8Q2Y0W8 1093 aa6.59□□□□□ -1.35
VRK3-226ENST00000602029 TWISTNBQ3B726 338 aaPredicted RBP6.59□□□□□ -1.35
VRK3-226ENST00000602029 SUPT20HL1Q3ZLR7 823 aa6.59□□□□□ -1.35
VRK3-226ENST00000602029 SPRYD7Q5W111 196 aa6.59□□□□□ -1.35
VRK3-226ENST00000602029 VPS37DQ86XT2 251 aa6.59□□□□□ -1.35
VRK3-226ENST00000602029 ERO1AQ96HE7 468 aa6.59□□□□□ -1.35
VRK3-226ENST00000602029 GMLQ99445 158 aa6.59□□□□□ -1.35
VRK3-226ENST00000602029 CNNM1Q9NRU3 951 aa6.59□□□□□ -1.35
VRK3-226ENST00000602029 ANP32CO43423 234 aa6.58□□□□□ -1.36
VRK3-226ENST00000602029 IGKV5-2P06315 115 aa6.58□□□□□ -1.36
VRK3-226ENST00000602029 TM4SF4P48230 202 aa6.58□□□□□ -1.36
VRK3-226ENST00000602029 ARHGEF6Q15052 776 aa6.58□□□□□ -1.36
VRK3-226ENST00000602029 CCDC57Q2TAC2 916 aa6.58□□□□□ -1.36
VRK3-226ENST00000602029 CFAP100Q494V2 611 aa6.58□□□□□ -1.36
VRK3-226ENST00000602029 TXNRD3Q86VQ6 643 aa6.58□□□□□ -1.36
VRK3-226ENST00000602029 IFNL1Q8IU54 200 aa6.58□□□□□ -1.36
VRK3-226ENST00000602029 TSPYL6Q8N831 410 aa6.58□□□□□ -1.36
VRK3-226ENST00000602029 CD99L2Q8TCZ2 262 aa6.58□□□□□ -1.36
VRK3-226ENST00000602029 WNK4Q96J92 1243 aa6.58□□□□□ -1.36
VRK3-226ENST00000602029 CLMNQ96JQ2 1002 aa6.58□□□□□ -1.36
VRK3-226ENST00000602029 ELP3Q9H9T3 547 aa6.58□□□□□ -1.36
VRK3-226ENST00000602029 EFCC1Q9HA90 598 aa6.58□□□□□ -1.36
VRK3-226ENST00000602029 EYSQ5T1H1 3165 aa6.57□□□□□ -1.36
VRK3-226ENST00000602029 TCP10L2B9ZVM9 353 aa6.57□□□□□ -1.36
VRK3-226ENST00000602029 ZNF853P0CG23 659 aa6.57□□□□□ -1.36
VRK3-226ENST00000602029 EN2P19622 333 aaPredicted RBP6.57□□□□□ -1.36
VRK3-226ENST00000602029 INHBEP58166 350 aa6.57□□□□□ -1.36
VRK3-226ENST00000602029 CACNB1Q02641 598 aaPredicted RBP6.57□□□□□ -1.36
VRK3-226ENST00000602029 FLIIQ13045 1269 aa6.57□□□□□ -1.36
VRK3-226ENST00000602029 CHAF1AQ13111 956 aaPredicted RBP6.57□□□□□ -1.36
VRK3-226ENST00000602029 TNFAIP1Q13829 316 aa6.57□□□□□ -1.36
VRK3-226ENST00000602029 GCKRQ14397 625 aa6.57□□□□□ -1.36
VRK3-226ENST00000602029 KIF22Q14807 665 aa6.57□□□□□ -1.36
VRK3-226ENST00000602029 SLC9C1Q4G0N8 1177 aa6.57□□□□□ -1.36
VRK3-226ENST00000602029 INTS3Q68E01 1043 aaKnown RBP6.57□□□□□ -1.36
VRK3-226ENST00000602029 SLC4A10Q6U841 1118 aa6.57□□□□□ -1.36
VRK3-226ENST00000602029 G2E3Q7L622 706 aa6.57□□□□□ -1.36
VRK3-226ENST00000602029 DNAAF4Q8WXU2 420 aa6.57□□□□□ -1.36
VRK3-226ENST00000602029 COL25A1Q9BXS0 654 aaPredicted RBP6.57□□□□□ -1.36
VRK3-226ENST00000602029 R3HDMLQ9H3Y0 253 aa6.57□□□□□ -1.36
VRK3-226ENST00000602029 CD209Q9NNX6 404 aa6.57□□□□□ -1.36
VRK3-226ENST00000602029 C9orf78Q9NZ63 289 aaPredicted RBP6.57□□□□□ -1.36
VRK3-226ENST00000602029 TMOD2Q9NZR1 351 aa6.57□□□□□ -1.36
VRK3-226ENST00000602029 PPP2R3BQ9Y5P8 575 aa6.57□□□□□ -1.36
VRK3-226ENST00000602029 CSADQ9Y600 493 aa6.57□□□□□ -1.36
VRK3-226ENST00000602029 H0YGN5 161 aa6.56□□□□□ -1.36
VRK3-226ENST00000602029 SNAP23O00161 211 aa6.56□□□□□ -1.36
VRK3-226ENST00000602029 ZBTB48P10074 688 aaPredicted RBP6.56□□□□□ -1.36
VRK3-226ENST00000602029 TNNI2P48788 182 aa6.56□□□□□ -1.36
VRK3-226ENST00000602029 MNX1P50219 401 aaPredicted RBP6.56□□□□□ -1.36
VRK3-226ENST00000602029 MMP14P50281 582 aa6.56□□□□□ -1.36
VRK3-226ENST00000602029 SP3Q02447 781 aa6.56□□□□□ -1.36
VRK3-226ENST00000602029 CRHR2Q13324 411 aa6.56□□□□□ -1.36
VRK3-226ENST00000602029 RASA3Q14644 834 aa6.56□□□□□ -1.36
VRK3-226ENST00000602029 TAF1CQ15572 869 aaPredicted RBP6.56□□□□□ -1.36
VRK3-226ENST00000602029 MFSD14BQ5SR56 506 aa6.56□□□□□ -1.36
VRK3-226ENST00000602029 NBPF12Q5TAG4 269 aaPredicted RBP6.56□□□□□ -1.36
VRK3-226ENST00000602029 CHRDL2Q6WN34 429 aa6.56□□□□□ -1.36
VRK3-226ENST00000602029 LDHAL6AQ6ZMR3 332 aa6.56□□□□□ -1.36
VRK3-226ENST00000602029 OTOP1Q7RTM1 612 aa6.56□□□□□ -1.36
VRK3-226ENST00000602029 NBPF11Q86T75 865 aa6.56□□□□□ -1.36
VRK3-226ENST00000602029 ANKRD13AQ8IZ07 590 aa6.56□□□□□ -1.36
VRK3-226ENST00000602029 OPTNQ96CV9 577 aa6.56□□□□□ -1.36
VRK3-226ENST00000602029 YTHDC1Q96MU7 727 aaKnown RBP6.56□□□□□ -1.36
VRK3-226ENST00000602029 PRKRIP1Q9H875 184 aaPredicted RBP6.56□□□□□ -1.36
VRK3-226ENST00000602029 ZFYVE28Q9HCC9 887 aa6.56□□□□□ -1.36
VRK3-226ENST00000602029 RBM27Q9P2N5 1060 aaKnown RBP6.56□□□□□ -1.36
VRK3-226ENST00000602029 BIN2Q9UBW5 565 aaPredicted RBP6.56□□□□□ -1.36
VRK3-226ENST00000602029 TTF2Q9UNY4 1162 aaKnown RBP6.56□□□□□ -1.36
VRK3-226ENST00000602029 PCDHAC2Q9Y5I4 1007 aa6.56□□□□□ -1.36
VRK3-226ENST00000602029 ZNF609O15014 1411 aa6.56□□□□□ -1.36
VRK3-226ENST00000602029 PRUNE2Q8WUY3 3088 aa6.55□□□□□ -1.36
VRK3-226ENST00000602029 CCL15-CCL14A0A0B4J2E2 113 aa6.55□□□□□ -1.36
VRK3-226ENST00000602029 SPDYE2BA6NHP3 402 aa6.55□□□□□ -1.36
VRK3-226ENST00000602029 F6X3S4 739 aa6.55□□□□□ -1.36
VRK3-226ENST00000602029 H7C1W4 665 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms