RNA–Protein interactions for RNA: ENST00000601324.1

VRK3-222, Transcript of vaccinia related kinase 3, human

TSL 4

Gene VRK3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-222	ENST00000601324	FBXO33	Q7Z6M2	555 aa		7.13	□□□□□ -1.27
VRK3-222	ENST00000601324	GOLGA6L1	Q8N7Z2	621 aa		7.13	□□□□□ -1.27
VRK3-222	ENST00000601324	TNFRSF25	Q93038	417 aa		7.13	□□□□□ -1.27
VRK3-222	ENST00000601324	OXCT2	Q9BYC2	517 aa	Predicted RBP	7.13	□□□□□ -1.27
VRK3-222	ENST00000601324	ZFYVE28	Q9HCC9	887 aa		7.13	□□□□□ -1.27
VRK3-222	ENST00000601324	CLTC	Q00610	1675 aa	Known RBP	7.12	□□□□□ -1.27
VRK3-222	ENST00000601324	PNMA6F	A0A0J9YX94	578 aa		7.12	□□□□□ -1.27
VRK3-222	ENST00000601324	PHF20L1	A8MW92	1017 aa		7.12	□□□□□ -1.27
VRK3-222	ENST00000601324	EREG	O14944	169 aa		7.12	□□□□□ -1.27
VRK3-222	ENST00000601324	ADAMTS2	O95450	1211 aa		7.12	□□□□□ -1.27
VRK3-222	ENST00000601324	CYP2E1	P05181	493 aa	Predicted RBP	7.12	□□□□□ -1.27
VRK3-222	ENST00000601324	NRL	P54845	237 aa		7.12	□□□□□ -1.27
VRK3-222	ENST00000601324	GPLD1	P80108	840 aa		7.12	□□□□□ -1.27
VRK3-222	ENST00000601324	PCSK7	Q16549	785 aa		7.12	□□□□□ -1.27
VRK3-222	ENST00000601324	SLCO4C1	Q6ZQN7	724 aa		7.12	□□□□□ -1.27
VRK3-222	ENST00000601324	TRPM4	Q8TD43	1214 aa		7.12	□□□□□ -1.27
VRK3-222	ENST00000601324	MDFI	Q99750	246 aa		7.12	□□□□□ -1.27
VRK3-222	ENST00000601324	UBE2O	Q9C0C9	1292 aa	Known RBP	7.12	□□□□□ -1.27
VRK3-222	ENST00000601324	GGA1	Q9UJY5	639 aa		7.12	□□□□□ -1.27
VRK3-222	ENST00000601324	GDF2	Q9UK05	429 aa	Predicted RBP	7.12	□□□□□ -1.27
VRK3-222	ENST00000601324	AMOTL2	Q9Y2J4	779 aa		7.12	□□□□□ -1.27
VRK3-222	ENST00000601324	POLR1A	O95602	1720 aa	Predicted RBP	7.12	□□□□□ -1.27
VRK3-222	ENST00000601324	SRCAP	Q6ZRS2	3230 aa		7.12	□□□□□ -1.27
VRK3-222	ENST00000601324	NEURL1B	A8MQ27	555 aa		7.11	□□□□□ -1.27
VRK3-222	ENST00000601324	ADARB2-AS1	A8MUL3	147 aa		7.11	□□□□□ -1.27
VRK3-222	ENST00000601324	SLURP2	P0DP57	97 aa		7.11	□□□□□ -1.27
VRK3-222	ENST00000601324	ATP2B2	Q01814	1243 aa		7.11	□□□□□ -1.27
VRK3-222	ENST00000601324	USPL1	Q5W0Q7	1092 aa		7.11	□□□□□ -1.27
VRK3-222	ENST00000601324	FCHSD1	Q86WN1	690 aa		7.11	□□□□□ -1.27
VRK3-222	ENST00000601324	BCL2L13	Q9BXK5	485 aa		7.11	□□□□□ -1.27
VRK3-222	ENST00000601324	DNAJB12	Q9NXW2	375 aa	Known RBP	7.11	□□□□□ -1.27
VRK3-222	ENST00000601324	DEPDC5	O75140	1603 aa		7.11	□□□□□ -1.27
VRK3-222	ENST00000601324	PREX2	Q70Z35	1606 aa		7.11	□□□□□ -1.27
VRK3-222	ENST00000601324	RNF17	Q9BXT8	1623 aa	Known RBP	7.11	□□□□□ -1.27
VRK3-222	ENST00000601324	NPHP4	O75161	1426 aa	Predicted RBP	7.1	□□□□□ -1.27
VRK3-222	ENST00000601324	FAM135B	Q49AJ0	1406 aa		7.1	□□□□□ -1.27
VRK3-222	ENST00000601324	SETD1A	O15047	1707 aa	Known RBP	7.1	□□□□□ -1.27
VRK3-222	ENST00000601324	KIF4A	O95239	1232 aa		7.1	□□□□□ -1.27
VRK3-222	ENST00000601324	LDHB	P07195	334 aa	Known RBP	7.1	□□□□□ -1.27
VRK3-222	ENST00000601324	ADH7	P40394	386 aa		7.1	□□□□□ -1.27
VRK3-222	ENST00000601324	FGD1	P98174	961 aa		7.1	□□□□□ -1.27
VRK3-222	ENST00000601324	HYAL2	Q12891	473 aa		7.1	□□□□□ -1.27
VRK3-222	ENST00000601324	LCE2A	Q5TA79	106 aa	Predicted RBP	7.1	□□□□□ -1.27
VRK3-222	ENST00000601324	FBF1	Q8TES7	1133 aa		7.1	□□□□□ -1.27
VRK3-222	ENST00000601324	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	7.1	□□□□□ -1.27
VRK3-222	ENST00000601324	ACD	Q96AP0	544 aa		7.1	□□□□□ -1.27
VRK3-222	ENST00000601324	IGFLR1	Q9H665	355 aa		7.1	□□□□□ -1.27
VRK3-222	ENST00000601324	KANSL3	Q9P2N6	904 aa		7.1	□□□□□ -1.27
VRK3-222	ENST00000601324	A2M	P01023	1474 aa		7.1	□□□□□ -1.27
VRK3-222	ENST00000601324	SUPT6H	Q7KZ85	1726 aa	Known RBP	7.1	□□□□□ -1.27
VRK3-222	ENST00000601324	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	7.09	□□□□□ -1.27
VRK3-222	ENST00000601324	SYNM	O15061	1565 aa		7.09	□□□□□ -1.27
VRK3-222	ENST00000601324	INO80	Q9ULG1	1556 aa	Predicted RBP	7.09	□□□□□ -1.27
VRK3-222	ENST00000601324	RBM47	A0AV96	593 aa	Known RBP	7.09	□□□□□ -1.27
VRK3-222	ENST00000601324	ZBTB42	B2RXF5	422 aa		7.09	□□□□□ -1.27
VRK3-222	ENST00000601324	TBC1D8B	Q0IIM8	1120 aa		7.09	□□□□□ -1.27
VRK3-222	ENST00000601324	COL13A1	Q5TAT6	717 aa	Predicted RBP	7.09	□□□□□ -1.27
VRK3-222	ENST00000601324	ALG1L	Q6GMV1	187 aa		7.09	□□□□□ -1.27
VRK3-222	ENST00000601324	GALNT12	Q8IXK2	581 aa		7.09	□□□□□ -1.27
VRK3-222	ENST00000601324	GIPC2	Q8TF65	315 aa		7.09	□□□□□ -1.27
VRK3-222	ENST00000601324	NSUN5	Q96P11	429 aa	Known RBP	7.09	□□□□□ -1.27
VRK3-222	ENST00000601324	SALL4	Q9UJQ4	1053 aa		7.09	□□□□□ -1.27
VRK3-222	ENST00000601324	SLC6A14	Q9UN76	642 aa		7.09	□□□□□ -1.27
VRK3-222	ENST00000601324	TNR	Q92752	1358 aa		7.08	□□□□□ -1.28
VRK3-222	ENST00000601324	ELOA3C	A0A087WX78	387 aa	Predicted RBP	7.08	□□□□□ -1.28
VRK3-222	ENST00000601324	ELOA3D	A6NLF2	546 aa	Predicted RBP	7.08	□□□□□ -1.28
VRK3-222	ENST00000601324	PRPF40A	O75400	957 aa	Known RBP	7.08	□□□□□ -1.28
VRK3-222	ENST00000601324	POLR3D	P05423	398 aa	Predicted RBP	7.08	□□□□□ -1.28
VRK3-222	ENST00000601324	EPX	P11678	715 aa		7.08	□□□□□ -1.28
VRK3-222	ENST00000601324	EDN3	P14138	238 aa		7.08	□□□□□ -1.28
VRK3-222	ENST00000601324	MLLT1	Q03111	559 aa	Predicted RBP	7.08	□□□□□ -1.28
VRK3-222	ENST00000601324	ELOA3B	Q3SY89	546 aa		7.08	□□□□□ -1.28
VRK3-222	ENST00000601324	ZNF326	Q5BKZ1	582 aa	Known RBP	7.08	□□□□□ -1.28
VRK3-222	ENST00000601324	NCAPG2	Q86XI2	1143 aa		7.08	□□□□□ -1.28
VRK3-222	ENST00000601324	ANKLE2	Q86XL3	938 aa		7.08	□□□□□ -1.28
VRK3-222	ENST00000601324	ELOA3	Q8NG57	546 aa		7.08	□□□□□ -1.28
VRK3-222	ENST00000601324	CCDC74A	Q96AQ1	378 aa		7.08	□□□□□ -1.28
VRK3-222	ENST00000601324	SETDB2	Q96T68	719 aa		7.08	□□□□□ -1.28
VRK3-222	ENST00000601324	LRRC4B	Q9NT99	713 aa		7.08	□□□□□ -1.28
VRK3-222	ENST00000601324	WWC3	Q9ULE0	1092 aa		7.08	□□□□□ -1.28
VRK3-222	ENST00000601324	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	7.08	□□□□□ -1.28
VRK3-222	ENST00000601324	LRRIQ1	Q96JM4	1722 aa		7.07	□□□□□ -1.28
VRK3-222	ENST00000601324	ATP7A	Q04656	1500 aa		7.07	□□□□□ -1.28
VRK3-222	ENST00000601324	PZP	P20742	1482 aa		7.07	□□□□□ -1.28
VRK3-222	ENST00000601324	ARHGAP35	Q9NRY4	1499 aa		7.07	□□□□□ -1.28
VRK3-222	ENST00000601324	XIRP1	Q702N8	1843 aa	Known RBP	7.07	□□□□□ -1.28
VRK3-222	ENST00000601324	LOC102724428	A0A0B4J2F2	783 aa		7.07	□□□□□ -1.28
VRK3-222	ENST00000601324	OIP5	O43482	229 aa		7.07	□□□□□ -1.28
VRK3-222	ENST00000601324	SIK1	P57059	783 aa		7.07	□□□□□ -1.28
VRK3-222	ENST00000601324	FAM35A	Q86V20	835 aa		7.07	□□□□□ -1.28
VRK3-222	ENST00000601324	CDK11A	Q9UQ88	783 aa	Predicted RBP	7.07	□□□□□ -1.28
VRK3-222	ENST00000601324	KIAA1107	Q9UPP5	1409 aa		7.07	□□□□□ -1.28
VRK3-222	ENST00000601324	ZC3H13	Q5T200	1668 aa	Known RBP	7.06	□□□□□ -1.28
VRK3-222	ENST00000601324	BCR	P11274	1271 aa		7.06	□□□□□ -1.28
VRK3-222	ENST00000601324	ZNF16	P17020	682 aa	Predicted RBP	7.06	□□□□□ -1.28
VRK3-222	ENST00000601324	EIF2AK2	P19525	551 aa	Known RBP	7.06	□□□□□ -1.28
VRK3-222	ENST00000601324	ALAS2	P22557	587 aa		7.06	□□□□□ -1.28
VRK3-222	ENST00000601324	RANGAP1	P46060	587 aa	Predicted RBP	7.06	□□□□□ -1.28
VRK3-222	ENST00000601324	C1orf229	Q6ZS94	237 aa	Predicted RBP	7.06	□□□□□ -1.28
VRK3-222	ENST00000601324	HFE2	Q6ZVN8	426 aa		7.06	□□□□□ -1.28

Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms