RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 GTF2IP78347 998 aa20.42■□□□□ 0.86
USHBP1-210ENST00000600286 CXCL9Q07325 125 aa20.42■□□□□ 0.86
USHBP1-210ENST00000600286 GPC2Q8N158 579 aa20.42■□□□□ 0.86
USHBP1-210ENST00000600286 TBC1D22AQ8WUA7 517 aa20.42■□□□□ 0.86
USHBP1-210ENST00000600286 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.42■□□□□ 0.86
USHBP1-210ENST00000600286 YDJCA8MPS7 323 aa20.41■□□□□ 0.86
USHBP1-210ENST00000600286 APLP1P51693 650 aa20.41■□□□□ 0.86
USHBP1-210ENST00000600286 FSTL1Q12841 308 aa20.41■□□□□ 0.86
USHBP1-210ENST00000600286 CHAF1AQ13111 956 aaPredicted RBP20.41■□□□□ 0.86
USHBP1-210ENST00000600286 CHD1LQ86WJ1 897 aa20.41■□□□□ 0.86
USHBP1-210ENST00000600286 WDR66Q8TBY9 1149 aa20.41■□□□□ 0.86
USHBP1-210ENST00000600286 DBNLQ9UJU6 430 aaKnown RBP20.41■□□□□ 0.86
USHBP1-210ENST00000600286 IQSEC3Q9UPP2 1182 aaPredicted RBP20.41■□□□□ 0.86
USHBP1-210ENST00000600286 ZGPATQ8N5A5 531 aaKnown RBP20.4■□□□□ 0.86
USHBP1-210ENST00000600286 MYO3BQ8WXR4 1341 aa20.4■□□□□ 0.86
USHBP1-210ENST00000600286 ZNF512BQ96KM6 892 aaPredicted RBP20.4■□□□□ 0.86
USHBP1-210ENST00000600286 PSMD14O00487 310 aa20.39■□□□□ 0.85
USHBP1-210ENST00000600286 ZBTB22O15209 634 aa20.39■□□□□ 0.85
USHBP1-210ENST00000600286 VIL1P09327 827 aaKnown RBP20.39■□□□□ 0.85
USHBP1-210ENST00000600286 RPS12P25398 132 aaKnown RBP20.39■□□□□ 0.85
USHBP1-210ENST00000600286 LMOD1P29536 600 aaPredicted RBP20.39■□□□□ 0.85
USHBP1-210ENST00000600286 NUCB1Q02818 461 aa20.39■□□□□ 0.85
USHBP1-210ENST00000600286 LNPKQ9C0E8 428 aa20.39■□□□□ 0.85
USHBP1-210ENST00000600286 SCN4AP35499 1836 aa20.39■□□□□ 0.85
USHBP1-210ENST00000600286 FAM205AQ6ZU69 1335 aa20.38■□□□□ 0.85
USHBP1-210ENST00000600286 ZNF541Q9H0D2 1346 aa20.38■□□□□ 0.85
USHBP1-210ENST00000600286 ERC2O15083 957 aa20.38■□□□□ 0.85
USHBP1-210ENST00000600286 ARID4AP29374 1257 aaPredicted RBP20.38■□□□□ 0.85
USHBP1-210ENST00000600286 FKBP1AP62942 108 aaKnown RBP20.38■□□□□ 0.85
USHBP1-210ENST00000600286 RSBN1LQ6PCB5 846 aaPredicted RBP20.38■□□□□ 0.85
USHBP1-210ENST00000600286 AGBL3Q8NEM8 1001 aa20.38■□□□□ 0.85
USHBP1-210ENST00000600286 KCNQ5Q9NR82 932 aa20.38■□□□□ 0.85
USHBP1-210ENST00000600286 ECHDC1Q9NTX5 307 aa20.38■□□□□ 0.85
USHBP1-210ENST00000600286 TLR7Q9NYK1 1049 aaKnown RBP20.38■□□□□ 0.85
USHBP1-210ENST00000600286 DDNO94850 711 aaPredicted RBP20.37■□□□□ 0.85
USHBP1-210ENST00000600286 VEGFAP15692 232 aaPredicted RBP20.37■□□□□ 0.85
USHBP1-210ENST00000600286 MMP14P50281 582 aa20.37■□□□□ 0.85
USHBP1-210ENST00000600286 SPTY2D1Q68D10 685 aaPredicted RBP20.37■□□□□ 0.85
USHBP1-210ENST00000600286 OGFOD1Q8N543 542 aa20.37■□□□□ 0.85
USHBP1-210ENST00000600286 SPATA5Q8NB90 893 aa20.37■□□□□ 0.85
USHBP1-210ENST00000600286 PDS5AQ29RF7 1337 aaKnown RBP20.36■□□□□ 0.85
USHBP1-210ENST00000600286 H7C1D1 291 aa20.36■□□□□ 0.85
USHBP1-210ENST00000600286 MFSD14BQ5SR56 506 aa20.36■□□□□ 0.85
USHBP1-210ENST00000600286 DACT2Q5SW24 774 aa20.36■□□□□ 0.85
USHBP1-210ENST00000600286 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.36■□□□□ 0.85
USHBP1-210ENST00000600286 DPF2Q92785 391 aa20.36■□□□□ 0.85
USHBP1-210ENST00000600286 HDAC9Q9UKV0 1011 aa20.36■□□□□ 0.85
USHBP1-210ENST00000600286 TTC41PQ6P2S7 1318 aa20.35■□□□□ 0.85
USHBP1-210ENST00000600286 IQCA1LA6NCM1 817 aa20.35■□□□□ 0.85
USHBP1-210ENST00000600286 ATP5JP18859 108 aa20.35■□□□□ 0.85
USHBP1-210ENST00000600286 RASGRF1Q13972 1273 aa20.35■□□□□ 0.85
USHBP1-210ENST00000600286 JAG2Q9Y219 1238 aa20.35■□□□□ 0.85
USHBP1-210ENST00000600286 SUGT1Q9Y2Z0 365 aa20.35■□□□□ 0.85
USHBP1-210ENST00000600286 A0A1B0GUL6 1792 aa20.35■□□□□ 0.85
USHBP1-210ENST00000600286 COL4A5P29400 1685 aa20.35■□□□□ 0.85
USHBP1-210ENST00000600286 ADAMTSL1Q8N6G6 1762 aa20.34■□□□□ 0.85
USHBP1-210ENST00000600286 MX1P20591 662 aa20.34■□□□□ 0.85
USHBP1-210ENST00000600286 GMPSP49915 693 aaPredicted RBP20.34■□□□□ 0.85
USHBP1-210ENST00000600286 C16orf71Q8IYS4 520 aaPredicted RBP20.34■□□□□ 0.85
USHBP1-210ENST00000600286 HMG20BQ9P0W2 317 aa20.34■□□□□ 0.85
USHBP1-210ENST00000600286 ABCF2Q9UG63 623 aa20.34■□□□□ 0.85
USHBP1-210ENST00000600286 TTF1Q15361 905 aaPredicted RBP20.33■□□□□ 0.85
USHBP1-210ENST00000600286 SMC1BQ8NDV3 1235 aa20.33■□□□□ 0.85
USHBP1-210ENST00000600286 CNOT7Q9UIV1 285 aaKnown RBP20.33■□□□□ 0.85
USHBP1-210ENST00000600286 ZBTB12Q9Y330 459 aaPredicted RBP20.33■□□□□ 0.85
USHBP1-210ENST00000600286 MAST3O60307 1309 aa20.32■□□□□ 0.84
USHBP1-210ENST00000600286 GLRX3O76003 335 aaKnown RBP20.32■□□□□ 0.84
USHBP1-210ENST00000600286 LDHBP07195 334 aaKnown RBP20.32■□□□□ 0.84
USHBP1-210ENST00000600286 USP17L8P0C7I0 530 aa20.32■□□□□ 0.84
USHBP1-210ENST00000600286 MCAMP43121 646 aa20.32■□□□□ 0.84
USHBP1-210ENST00000600286 SLF2Q8IX21 1173 aa20.32■□□□□ 0.84
USHBP1-210ENST00000600286 L3MBTL3Q96JM7 780 aaPredicted RBP20.32■□□□□ 0.84
USHBP1-210ENST00000600286 BOLA2Q9H3K6 86 aa20.32■□□□□ 0.84
USHBP1-210ENST00000600286 SNRKQ9NRH2 765 aa20.32■□□□□ 0.84
USHBP1-210ENST00000600286 LRP2BPQ9P2M1 347 aa20.32■□□□□ 0.84
USHBP1-210ENST00000600286 HACL1Q9UJ83 578 aa20.32■□□□□ 0.84
USHBP1-210ENST00000600286 SALL1Q9NSC2 1324 aa20.31■□□□□ 0.84
USHBP1-210ENST00000600286 IGSF3O75054 1194 aa20.31■□□□□ 0.84
USHBP1-210ENST00000600286 HTRA3P83110 453 aa20.31■□□□□ 0.84
USHBP1-210ENST00000600286 ERICH6Q7L0X2 663 aa20.31■□□□□ 0.84
USHBP1-210ENST00000600286 KIAA0825Q8IV33 1275 aa20.31■□□□□ 0.84
USHBP1-210ENST00000600286 DNAJC2Q99543 621 aaKnown RBP20.31■□□□□ 0.84
USHBP1-210ENST00000600286 ZAP70P43403 619 aa20.3■□□□□ 0.84
USHBP1-210ENST00000600286 MXD3Q9BW11 206 aa20.3■□□□□ 0.84
USHBP1-210ENST00000600286 GPRC5DQ9NZD1 345 aa20.3■□□□□ 0.84
USHBP1-210ENST00000600286 STAP2Q9UGK3 403 aa20.3■□□□□ 0.84
USHBP1-210ENST00000600286 TTF2Q9UNY4 1162 aaKnown RBP20.3■□□□□ 0.84
USHBP1-210ENST00000600286 F8W031 263 aaPredicted RBP20.29■□□□□ 0.84
USHBP1-210ENST00000600286 PDE1AP54750 535 aa20.29■□□□□ 0.84
USHBP1-210ENST00000600286 SCARF1Q14162 830 aa20.29■□□□□ 0.84
USHBP1-210ENST00000600286 LRRFIP1Q32MZ4 808 aaKnown RBP20.29■□□□□ 0.84
USHBP1-210ENST00000600286 DZIP1Q86YF9 867 aaKnown RBP20.29■□□□□ 0.84
USHBP1-210ENST00000600286 MICALL2Q8IY33 904 aa20.29■□□□□ 0.84
USHBP1-210ENST00000600286 HAUS7Q99871 368 aa20.29■□□□□ 0.84
USHBP1-210ENST00000600286 RAI14Q9P0K7 980 aa20.29■□□□□ 0.84
USHBP1-210ENST00000600286 ARAP2Q8WZ64 1704 aa20.28■□□□□ 0.84
USHBP1-210ENST00000600286 RBM5P52756 815 aaKnown RBP eCLIP20.28■□□□□ 0.84
USHBP1-210ENST00000600286 GSTO1P78417 241 aa20.28■□□□□ 0.84
USHBP1-210ENST00000600286 MAP3K12Q12852 859 aa20.28■□□□□ 0.84
USHBP1-210ENST00000600286 PNMA8AQ86V59 439 aaPredicted RBP20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms