RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 IFNL1Q8IU54 200 aa7.85□□□□□ -1.15
VRK3-220ENST00000600259 WWC1Q8IX03 1113 aa7.85□□□□□ -1.15
VRK3-220ENST00000600259 SLC10A4Q96EP9 437 aa7.85□□□□□ -1.15
VRK3-220ENST00000600259 PRMT6Q96LA8 375 aaPredicted RBP7.85□□□□□ -1.15
VRK3-220ENST00000600259 PTPN18Q99952 460 aa7.85□□□□□ -1.15
VRK3-220ENST00000600259 ANGEL1Q9UNK9 670 aaKnown RBP7.85□□□□□ -1.15
VRK3-220ENST00000600259 SSC5DA1L4H1 1573 aa7.84□□□□□ -1.15
VRK3-220ENST00000600259 TESPA1A2RU30 521 aaPredicted RBP7.84□□□□□ -1.15
VRK3-220ENST00000600259 POTEFA5A3E0 1075 aa7.84□□□□□ -1.15
VRK3-220ENST00000600259 SPDYE2BA6NHP3 402 aa7.84□□□□□ -1.15
VRK3-220ENST00000600259 MANSC4A6NHS7 340 aaPredicted RBP7.84□□□□□ -1.15
VRK3-220ENST00000600259 UNCXA6NJT0 531 aa7.84□□□□□ -1.15
VRK3-220ENST00000600259 TAF5LO75529 589 aa7.84□□□□□ -1.15
VRK3-220ENST00000600259 ALDH1A1P00352 501 aa7.84□□□□□ -1.15
VRK3-220ENST00000600259 SPDYE6P0CI01 402 aa7.84□□□□□ -1.15
VRK3-220ENST00000600259 FKBP1AP62942 108 aaKnown RBP7.84□□□□□ -1.15
VRK3-220ENST00000600259 DLGAP5Q15398 846 aa7.84□□□□□ -1.15
VRK3-220ENST00000600259 CCDC27Q2M243 656 aa7.84□□□□□ -1.15
VRK3-220ENST00000600259 TWISTNBQ3B726 338 aaPredicted RBP7.84□□□□□ -1.15
VRK3-220ENST00000600259 EPHA10Q5JZY3 1008 aa7.84□□□□□ -1.15
VRK3-220ENST00000600259 NBPF12Q5TAG4 269 aaPredicted RBP7.84□□□□□ -1.15
VRK3-220ENST00000600259 OTOP1Q7RTM1 612 aa7.84□□□□□ -1.15
VRK3-220ENST00000600259 HELBQ8NG08 1087 aaPredicted RBP7.84□□□□□ -1.15
VRK3-220ENST00000600259 LINS1Q8NG48 757 aa7.84□□□□□ -1.15
VRK3-220ENST00000600259 FBXW7Q969H0 707 aa7.84□□□□□ -1.15
VRK3-220ENST00000600259 WNK4Q96J92 1243 aa7.84□□□□□ -1.15
VRK3-220ENST00000600259 VAMP4O75379 141 aa7.83□□□□□ -1.16
VRK3-220ENST00000600259 ZBTB48P10074 688 aaPredicted RBP7.83□□□□□ -1.16
VRK3-220ENST00000600259 FLIIQ13045 1269 aa7.83□□□□□ -1.16
VRK3-220ENST00000600259 CFAP100Q494V2 611 aa7.83□□□□□ -1.16
VRK3-220ENST00000600259 DNAAF4Q8WXU2 420 aa7.83□□□□□ -1.16
VRK3-220ENST00000600259 MS4A4AQ96JQ5 239 aa7.83□□□□□ -1.16
VRK3-220ENST00000600259 MPHOSPH8Q99549 860 aa7.83□□□□□ -1.16
VRK3-220ENST00000600259 STK31Q9BXU1 1019 aa7.83□□□□□ -1.16
VRK3-220ENST00000600259 TRIM17Q9Y577 477 aa7.83□□□□□ -1.16
VRK3-220ENST00000600259 PPP2R3BQ9Y5P8 575 aa7.83□□□□□ -1.16
VRK3-220ENST00000600259 MKI67P46013 3256 aaKnown RBP7.83□□□□□ -1.16
VRK3-220ENST00000600259 IL16Q14005 1332 aa7.82□□□□□ -1.16
VRK3-220ENST00000600259 FAM205AQ6ZU69 1335 aa7.82□□□□□ -1.16
VRK3-220ENST00000600259 CLRN2A0PK11 232 aa7.82□□□□□ -1.16
VRK3-220ENST00000600259 ANKRD18BA2A2Z9 1011 aa7.82□□□□□ -1.16
VRK3-220ENST00000600259 PPP1R12BO60237 982 aaPredicted RBP7.82□□□□□ -1.16
VRK3-220ENST00000600259 CRHR2Q13324 411 aa7.82□□□□□ -1.16
VRK3-220ENST00000600259 RASA3Q14644 834 aa7.82□□□□□ -1.16
VRK3-220ENST00000600259 SUPT20HL1Q3ZLR7 823 aa7.82□□□□□ -1.16
VRK3-220ENST00000600259 BEND3Q5T5X7 828 aa7.82□□□□□ -1.16
VRK3-220ENST00000600259 INTS3Q68E01 1043 aaKnown RBP7.82□□□□□ -1.16
VRK3-220ENST00000600259 TDRD7Q8NHU6 1098 aaKnown RBP7.82□□□□□ -1.16
VRK3-220ENST00000600259 ARMC5Q96C12 935 aa7.82□□□□□ -1.16
VRK3-220ENST00000600259 TEPSINQ96N21 525 aa7.82□□□□□ -1.16
VRK3-220ENST00000600259 PTPN22Q9Y2R2 807 aa7.82□□□□□ -1.16
VRK3-220ENST00000600259 KIAA0100Q14667 2235 aaKnown RBP7.82□□□□□ -1.16
VRK3-220ENST00000600259 COL1A1P02452 1464 aaPredicted RBP7.81□□□□□ -1.16
VRK3-220ENST00000600259 F8W031 263 aaPredicted RBP7.81□□□□□ -1.16
VRK3-220ENST00000600259 EN2P19622 333 aaPredicted RBP7.81□□□□□ -1.16
VRK3-220ENST00000600259 HABP4Q5JVS0 413 aaKnown RBP7.81□□□□□ -1.16
VRK3-220ENST00000600259 LMBR1LQ6UX01 489 aa7.81□□□□□ -1.16
VRK3-220ENST00000600259 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.81□□□□□ -1.16
VRK3-220ENST00000600259 CDAN1Q8IWY9 1227 aa7.81□□□□□ -1.16
VRK3-220ENST00000600259 CD99L2Q8TCZ2 262 aa7.81□□□□□ -1.16
VRK3-220ENST00000600259 ZNF594Q96JF6 807 aaPredicted RBP7.81□□□□□ -1.16
VRK3-220ENST00000600259 MYH16Q9H6N6 1097 aa7.81□□□□□ -1.16
VRK3-220ENST00000600259 FOXD4L1Q9NU39 408 aa7.81□□□□□ -1.16
VRK3-220ENST00000600259 ZNF70Q9UC06 446 aaPredicted RBP7.81□□□□□ -1.16
VRK3-220ENST00000600259 F6X3S4 739 aa7.8□□□□□ -1.16
VRK3-220ENST00000600259 KCNJ4P48050 445 aa7.8□□□□□ -1.16
VRK3-220ENST00000600259 IFIT5Q13325 482 aaKnown RBP7.8□□□□□ -1.16
VRK3-220ENST00000600259 FKBP5Q13451 457 aaPredicted RBP7.8□□□□□ -1.16
VRK3-220ENST00000600259 GRIK5Q16478 980 aa7.8□□□□□ -1.16
VRK3-220ENST00000600259 SPDYE2Q495Y8 402 aa7.8□□□□□ -1.16
VRK3-220ENST00000600259 ANKRD13AQ8IZ07 590 aa7.8□□□□□ -1.16
VRK3-220ENST00000600259 BRI3BPQ8WY22 251 aa7.8□□□□□ -1.16
VRK3-220ENST00000600259 ERO1AQ96HE7 468 aa7.8□□□□□ -1.16
VRK3-220ENST00000600259 KAZALD1Q96I82 304 aa7.8□□□□□ -1.16
VRK3-220ENST00000600259 FAM84BQ96KN1 310 aaPredicted RBP7.8□□□□□ -1.16
VRK3-220ENST00000600259 EFCC1Q9HA90 598 aa7.8□□□□□ -1.16
VRK3-220ENST00000600259 SPINK5Q9NQ38 1064 aaPredicted RBP7.8□□□□□ -1.16
VRK3-220ENST00000600259 JAG2Q9Y219 1238 aa7.8□□□□□ -1.16
VRK3-220ENST00000600259 IREB2P48200 963 aaKnown RBP7.79□□□□□ -1.16
VRK3-220ENST00000600259 SP3Q02447 781 aa7.79□□□□□ -1.16
VRK3-220ENST00000600259 UBE4AQ14139 1066 aa7.79□□□□□ -1.16
VRK3-220ENST00000600259 LDHAL6AQ6ZMR3 332 aa7.79□□□□□ -1.16
VRK3-220ENST00000600259 ZNF804AQ7Z570 1209 aa7.79□□□□□ -1.16
VRK3-220ENST00000600259 FBXO33Q7Z6M2 555 aa7.79□□□□□ -1.16
VRK3-220ENST00000600259 DZIP1LQ8IYY4 767 aaKnown RBP7.79□□□□□ -1.16
VRK3-220ENST00000600259 GCC1Q96CN9 775 aa7.79□□□□□ -1.16
VRK3-220ENST00000600259 ZNF333Q96JL9 665 aa7.79□□□□□ -1.16
VRK3-220ENST00000600259 PUS3Q9BZE2 481 aaKnown RBP7.79□□□□□ -1.16
VRK3-220ENST00000600259 TDRD3Q9H7E2 651 aaKnown RBP7.79□□□□□ -1.16
VRK3-220ENST00000600259 VEZTQ9HBM0 779 aa7.79□□□□□ -1.16
VRK3-220ENST00000600259 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.79□□□□□ -1.16
VRK3-220ENST00000600259 RIPOR2Q9Y4F9 1068 aa7.79□□□□□ -1.16
VRK3-220ENST00000600259 CENPFP49454 3210 aa7.79□□□□□ -1.16
VRK3-220ENST00000600259 FANCIQ9NVI1 1328 aa7.78□□□□□ -1.16
VRK3-220ENST00000600259 MYH3P11055 1940 aa7.78□□□□□ -1.16
VRK3-220ENST00000600259 MYO1BO43795 1136 aa7.78□□□□□ -1.16
VRK3-220ENST00000600259 PLIN1O60240 522 aa7.78□□□□□ -1.16
VRK3-220ENST00000600259 HIBADHP31937 336 aaKnown RBP7.78□□□□□ -1.16
VRK3-220ENST00000600259 GYG1P46976 350 aa7.78□□□□□ -1.16
VRK3-220ENST00000600259 MAP3K9P80192 1104 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms