RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 KLRG1Q96E93 195 aa13.68□□□□□ -0.22
SHKBP1-206ENST00000595523 GGA3Q9NZ52 723 aa13.68□□□□□ -0.22
SHKBP1-206ENST00000595523 IQSEC3Q9UPP2 1182 aaPredicted RBP13.68□□□□□ -0.22
SHKBP1-206ENST00000595523 BCAMP50895 628 aa13.67□□□□□ -0.22
SHKBP1-206ENST00000595523 FKBP1AP62942 108 aaKnown RBP13.67□□□□□ -0.22
SHKBP1-206ENST00000595523 SCARF1Q14162 830 aa13.67□□□□□ -0.22
SHKBP1-206ENST00000595523 POLA2Q14181 598 aa13.67□□□□□ -0.22
SHKBP1-206ENST00000595523 NBPF9Q3BBW0 867 aa13.67□□□□□ -0.22
SHKBP1-206ENST00000595523 LPIN2Q92539 896 aa13.67□□□□□ -0.22
SHKBP1-206ENST00000595523 ZBED3Q96IU2 234 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-206ENST00000595523 THSD7BQ9C0I4 1608 aa13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 ADM5C9JUS6 153 aa13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 WNT10BO00744 389 aa13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 IFIT1P09914 478 aaKnown RBP13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 SLC5A1P13866 664 aa13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 ATP8B2P98198 1209 aa13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 MVPQ14764 893 aaKnown RBP13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 GRIK5Q16478 980 aa13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 ATP2B3Q16720 1220 aa13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 C20orf194Q5TEA3 1177 aa13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 ANGEL2Q5VTE6 544 aaKnown RBP13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 CDC37L1Q7L3B6 337 aa13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 USP48Q86UV5 1035 aa13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 OGFOD1Q8N543 542 aa13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 SSH3Q8TE77 659 aa13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 YTHDC1Q96MU7 727 aaKnown RBP13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 CEP126Q9P2H0 1117 aa13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 PCDHAC2Q9Y5I4 1007 aa13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 AKAP11Q9UKA4 1901 aa13.66□□□□□ -0.22
SHKBP1-206ENST00000595523 MYO5AQ9Y4I1 1855 aaKnown RBP13.65□□□□□ -0.22
SHKBP1-206ENST00000595523 TFCP2Q12800 502 aa13.65□□□□□ -0.22
SHKBP1-206ENST00000595523 CAVIN4Q5BKX8 364 aa13.65□□□□□ -0.22
SHKBP1-206ENST00000595523 MFSD14BQ5SR56 506 aa13.65□□□□□ -0.22
SHKBP1-206ENST00000595523 KRT26Q7Z3Y9 468 aa13.65□□□□□ -0.22
SHKBP1-206ENST00000595523 MKRN1Q9UHC7 482 aaKnown RBP13.65□□□□□ -0.22
SHKBP1-206ENST00000595523 COG6Q9Y2V7 657 aa13.65□□□□□ -0.22
SHKBP1-206ENST00000595523 CNTNAP1P78357 1384 aa13.65□□□□□ -0.22
SHKBP1-206ENST00000595523 AOX1Q06278 1338 aa13.64□□□□□ -0.23
SHKBP1-206ENST00000595523 MYH2Q9UKX2 1941 aa13.64□□□□□ -0.23
SHKBP1-206ENST00000595523 F8W031 263 aaPredicted RBP13.64□□□□□ -0.23
SHKBP1-206ENST00000595523 ADORA1P30542 326 aa13.64□□□□□ -0.23
SHKBP1-206ENST00000595523 MMP14P50281 582 aa13.64□□□□□ -0.23
SHKBP1-206ENST00000595523 CEP85Q6P2H3 762 aa13.64□□□□□ -0.23
SHKBP1-206ENST00000595523 VPS37DQ86XT2 251 aa13.64□□□□□ -0.23
SHKBP1-206ENST00000595523 JMYQ8N9B5 988 aa13.64□□□□□ -0.23
SHKBP1-206ENST00000595523 DCPSQ96C86 337 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-206ENST00000595523 SCAF8Q9UPN6 1271 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-206ENST00000595523 PITPNM2Q9BZ72 1349 aa13.64□□□□□ -0.23
SHKBP1-206ENST00000595523 RASSF10A6NK89 507 aa13.63□□□□□ -0.23
SHKBP1-206ENST00000595523 CELF2O95319 508 aaKnown RBP13.63□□□□□ -0.23
SHKBP1-206ENST00000595523 MS4A1P11836 297 aa13.63□□□□□ -0.23
SHKBP1-206ENST00000595523 PHKA1P46020 1223 aa13.63□□□□□ -0.23
SHKBP1-206ENST00000595523 CHAF1AQ13111 956 aaPredicted RBP13.63□□□□□ -0.23
SHKBP1-206ENST00000595523 MTMR14Q8NCE2 650 aa13.63□□□□□ -0.23
SHKBP1-206ENST00000595523 HDAC9Q9UKV0 1011 aa13.63□□□□□ -0.23
SHKBP1-206ENST00000595523 A0A1B0GUL7 405 aa13.62□□□□□ -0.23
SHKBP1-206ENST00000595523 TIMM10P62072 90 aa13.62□□□□□ -0.23
SHKBP1-206ENST00000595523 CFAP100Q494V2 611 aa13.62□□□□□ -0.23
SHKBP1-206ENST00000595523 SULF1Q8IWU6 871 aa13.62□□□□□ -0.23
SHKBP1-206ENST00000595523 ZNF408Q9H9D4 720 aa13.62□□□□□ -0.23
SHKBP1-206ENST00000595523 ZBTB40Q9NUA8 1239 aa13.62□□□□□ -0.23
SHKBP1-206ENST00000595523 DDX19BQ9UMR2 479 aa13.62□□□□□ -0.23
SHKBP1-206ENST00000595523 PAPPA2Q9BXP8 1791 aa13.62□□□□□ -0.23
SHKBP1-206ENST00000595523 SPDYE2BA6NHP3 402 aa13.61□□□□□ -0.23
SHKBP1-206ENST00000595523 SPDYE6P0CI01 402 aa13.61□□□□□ -0.23
SHKBP1-206ENST00000595523 PDE3AQ14432 1141 aa13.61□□□□□ -0.23
SHKBP1-206ENST00000595523 CCDC102BQ68D86 513 aa13.61□□□□□ -0.23
SHKBP1-206ENST00000595523 SAPCD2Q86UD0 394 aa13.61□□□□□ -0.23
SHKBP1-206ENST00000595523 CDCA5Q96FF9 252 aa13.61□□□□□ -0.23
SHKBP1-206ENST00000595523 PRMT6Q96LA8 375 aaPredicted RBP13.61□□□□□ -0.23
SHKBP1-206ENST00000595523 ABT1Q9ULW3 272 aaKnown RBP13.61□□□□□ -0.23
SHKBP1-206ENST00000595523 TTF2Q9UNY4 1162 aaKnown RBP13.61□□□□□ -0.23
SHKBP1-206ENST00000595523 NOP58Q9Y2X3 529 aaKnown RBP13.61□□□□□ -0.23
SHKBP1-206ENST00000595523 TLL2Q9Y6L7 1015 aa13.61□□□□□ -0.23
SHKBP1-206ENST00000595523 ZBTB22O15209 634 aa13.6□□□□□ -0.23
SHKBP1-206ENST00000595523 FRAT2O75474 233 aaPredicted RBP13.6□□□□□ -0.23
SHKBP1-206ENST00000595523 VEGFBP49765 207 aa13.6□□□□□ -0.23
SHKBP1-206ENST00000595523 G3BP1Q13283 466 aaKnown RBP eCLIP13.6□□□□□ -0.23
SHKBP1-206ENST00000595523 DLGAP5Q15398 846 aa13.6□□□□□ -0.23
SHKBP1-206ENST00000595523 SIRT2Q8IXJ6 389 aa13.6□□□□□ -0.23
SHKBP1-206ENST00000595523 TBC1D22AQ8WUA7 517 aa13.6□□□□□ -0.23
SHKBP1-206ENST00000595523 XAGE2Q96GT9 111 aa13.6□□□□□ -0.23
SHKBP1-206ENST00000595523 AKAP2Q9Y2D5 859 aa13.6□□□□□ -0.23
SHKBP1-206ENST00000595523 OTOFQ9HC10 1997 aa13.6□□□□□ -0.23
SHKBP1-206ENST00000595523 SURF6O75683 361 aaKnown RBP13.59□□□□□ -0.23
SHKBP1-206ENST00000595523 RASGRF1Q13972 1273 aa13.59□□□□□ -0.23
SHKBP1-206ENST00000595523 DEFB115Q30KQ5 88 aa13.59□□□□□ -0.23
SHKBP1-206ENST00000595523 PRAMEF18Q5VWM3 479 aa13.59□□□□□ -0.23
SHKBP1-206ENST00000595523 SERPINA10Q9UK55 444 aa13.59□□□□□ -0.23
SHKBP1-206ENST00000595523 SSC5DA1L4H1 1573 aa13.58□□□□□ -0.23
SHKBP1-206ENST00000595523 SEMA3EO15041 775 aa13.58□□□□□ -0.24
SHKBP1-206ENST00000595523 CRKP46108 304 aa13.58□□□□□ -0.24
SHKBP1-206ENST00000595523 GPR108Q9NPR9 543 aa13.58□□□□□ -0.24
SHKBP1-206ENST00000595523 SALL1Q9NSC2 1324 aa13.58□□□□□ -0.24
SHKBP1-206ENST00000595523 MAST2Q6P0Q8 1798 aa13.58□□□□□ -0.24
SHKBP1-206ENST00000595523 CDK5RAP2Q96SN8 1893 aa13.57□□□□□ -0.24
SHKBP1-206ENST00000595523 CLRN2A0PK11 232 aa13.57□□□□□ -0.24
SHKBP1-206ENST00000595523 PRDX5P30044 214 aa13.57□□□□□ -0.24
SHKBP1-206ENST00000595523 SPDYE2Q495Y8 402 aa13.57□□□□□ -0.24
SHKBP1-206ENST00000595523 TNNI3KQ59H18 835 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms