RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 MXD3Q9BW11 206 aa18.58■□□□□ 0.56
UPF1-202ENST00000594243 PGAP2Q9UHJ9 254 aa18.58■□□□□ 0.56
UPF1-202ENST00000594243 HDAC9Q9UKV0 1011 aa18.58■□□□□ 0.56
UPF1-202ENST00000594243 NOP58Q9Y2X3 529 aaKnown RBP18.58■□□□□ 0.56
UPF1-202ENST00000594243 HMMRO75330 724 aa18.57■□□□□ 0.56
UPF1-202ENST00000594243 TIMM10P62072 90 aa18.57■□□□□ 0.56
UPF1-202ENST00000594243 KIF4BQ2VIQ3 1234 aa18.57■□□□□ 0.56
UPF1-202ENST00000594243 MAP1SQ66K74 1059 aaPredicted RBP18.57■□□□□ 0.56
UPF1-202ENST00000594243 TRPM4Q8TD43 1214 aa18.57■□□□□ 0.56
UPF1-202ENST00000594243 MYOZ2Q9NPC6 264 aa18.57■□□□□ 0.56
UPF1-202ENST00000594243 GNL3LQ9NVN8 582 aaKnown RBP18.57■□□□□ 0.56
UPF1-202ENST00000594243 ADAMTSL1Q8N6G6 1762 aa18.56■□□□□ 0.56
UPF1-202ENST00000594243 A0A1B0GUL7 405 aa18.56■□□□□ 0.56
UPF1-202ENST00000594243 KIAA0825Q8IV33 1275 aa18.56■□□□□ 0.56
UPF1-202ENST00000594243 ITGBL1O95965 494 aaPredicted RBP18.55■□□□□ 0.56
UPF1-202ENST00000594243 APLP1P51693 650 aa18.55■□□□□ 0.56
UPF1-202ENST00000594243 HSP90AB4PQ58FF6 505 aa18.55■□□□□ 0.56
UPF1-202ENST00000594243 TBC1D22AQ8WUA7 517 aa18.55■□□□□ 0.56
UPF1-202ENST00000594243 NEUROD6Q96NK8 337 aa18.55■□□□□ 0.56
UPF1-202ENST00000594243 GPR108Q9NPR9 543 aa18.55■□□□□ 0.56
UPF1-202ENST00000594243 IQSEC3Q9UPP2 1182 aaPredicted RBP18.55■□□□□ 0.56
UPF1-202ENST00000594243 EGFRP00533 1210 aa18.54■□□□□ 0.56
UPF1-202ENST00000594243 MFSD14BQ5SR56 506 aa18.54■□□□□ 0.56
UPF1-202ENST00000594243 ERC1Q8IUD2 1116 aa18.54■□□□□ 0.56
UPF1-202ENST00000594243 CERS5Q8N5B7 392 aa18.54■□□□□ 0.56
UPF1-202ENST00000594243 JAG2Q9Y219 1238 aa18.54■□□□□ 0.56
UPF1-202ENST00000594243 SEMA3EO15041 775 aa18.53■□□□□ 0.56
UPF1-202ENST00000594243 ZBTB22O15209 634 aa18.53■□□□□ 0.56
UPF1-202ENST00000594243 CHAF1AQ13111 956 aaPredicted RBP18.53■□□□□ 0.56
UPF1-202ENST00000594243 CCDC102BQ68D86 513 aa18.53■□□□□ 0.56
UPF1-202ENST00000594243 CDC37L1Q7L3B6 337 aa18.53■□□□□ 0.56
UPF1-202ENST00000594243 DCPSQ96C86 337 aaKnown RBP18.53■□□□□ 0.56
UPF1-202ENST00000594243 XAGE2Q96GT9 111 aa18.53■□□□□ 0.56
UPF1-202ENST00000594243 F8W031 263 aaPredicted RBP18.52■□□□□ 0.56
UPF1-202ENST00000594243 ADORA1P30542 326 aa18.52■□□□□ 0.56
UPF1-202ENST00000594243 SCARF1Q14162 830 aa18.52■□□□□ 0.56
UPF1-202ENST00000594243 GORABQ5T7V8 394 aa18.52■□□□□ 0.56
UPF1-202ENST00000594243 WDR66Q8TBY9 1149 aa18.52■□□□□ 0.56
UPF1-202ENST00000594243 DENND2AQ9ULE3 1009 aa18.52■□□□□ 0.56
UPF1-202ENST00000594243 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.52■□□□□ 0.56
UPF1-202ENST00000594243 PASKQ96RG2 1323 aa18.51■□□□□ 0.55
UPF1-202ENST00000594243 PHKA1P46020 1223 aa18.51■□□□□ 0.55
UPF1-202ENST00000594243 TNNI3KQ59H18 835 aa18.51■□□□□ 0.55
UPF1-202ENST00000594243 SIRT2Q8IXJ6 389 aa18.51■□□□□ 0.55
UPF1-202ENST00000594243 EXOC6BQ9Y2D4 811 aa18.51■□□□□ 0.55
UPF1-202ENST00000594243 SUGT1Q9Y2Z0 365 aa18.51■□□□□ 0.55
UPF1-202ENST00000594243 FPGT-TNNI3KV9GXZ4 949 aa18.51■□□□□ 0.55
UPF1-202ENST00000594243 ZNF646O15015 1829 aaPredicted RBP18.51■□□□□ 0.55
UPF1-202ENST00000594243 DLGAP5Q15398 846 aa18.5■□□□□ 0.55
UPF1-202ENST00000594243 MTMR14Q8NCE2 650 aa18.5■□□□□ 0.55
UPF1-202ENST00000594243 TTF2Q9UNY4 1162 aaKnown RBP18.5■□□□□ 0.55
UPF1-202ENST00000594243 WNT10BO00744 389 aa18.49■□□□□ 0.55
UPF1-202ENST00000594243 RAB11FIP3O75154 756 aa18.49■□□□□ 0.55
UPF1-202ENST00000594243 RBM5P52756 815 aaKnown RBP eCLIP18.48■□□□□ 0.55
UPF1-202ENST00000594243 NBPF9Q3BBW0 867 aa18.48■□□□□ 0.55
UPF1-202ENST00000594243 CCDC158Q5M9N0 1113 aa18.48■□□□□ 0.55
UPF1-202ENST00000594243 ANGEL2Q5VTE6 544 aaKnown RBP18.48■□□□□ 0.55
UPF1-202ENST00000594243 KRT26Q7Z3Y9 468 aa18.48■□□□□ 0.55
UPF1-202ENST00000594243 USP48Q86UV5 1035 aa18.48■□□□□ 0.55
UPF1-202ENST00000594243 SULF1Q8IWU6 871 aa18.48■□□□□ 0.55
UPF1-202ENST00000594243 KIF1BPQ96EK5 621 aa18.48■□□□□ 0.55
UPF1-202ENST00000594243 CRBNQ96SW2 442 aa18.48■□□□□ 0.55
UPF1-202ENST00000594243 GLIS2Q9BZE0 524 aaPredicted RBP18.48■□□□□ 0.55
UPF1-202ENST00000594243 GGA3Q9NZ52 723 aa18.48■□□□□ 0.55
UPF1-202ENST00000594243 SERPINA10Q9UK55 444 aa18.48■□□□□ 0.55
UPF1-202ENST00000594243 PITPNM2Q9BZ72 1349 aa18.48■□□□□ 0.55
UPF1-202ENST00000594243 TMEM88BA6NKF7 163 aa18.47■□□□□ 0.55
UPF1-202ENST00000594243 MYO1BO43795 1136 aa18.47■□□□□ 0.55
UPF1-202ENST00000594243 HTRA3P83110 453 aa18.47■□□□□ 0.55
UPF1-202ENST00000594243 HDLBPQ00341 1268 aaKnown RBP18.47■□□□□ 0.55
UPF1-202ENST00000594243 CFAP100Q494V2 611 aa18.47■□□□□ 0.55
UPF1-202ENST00000594243 ZGPATQ8N5A5 531 aaKnown RBP18.47■□□□□ 0.55
UPF1-202ENST00000594243 RHPN1Q8TCX5 695 aa18.47■□□□□ 0.55
UPF1-202ENST00000594243 MRIQ9BWK5 157 aa18.47■□□□□ 0.55
UPF1-202ENST00000594243 CREBZFQ9NS37 354 aa18.47■□□□□ 0.55
UPF1-202ENST00000594243 SUPT16HQ9Y5B9 1047 aaKnown RBP18.47■□□□□ 0.55
UPF1-202ENST00000594243 MAST3O60307 1309 aa18.47■□□□□ 0.55
UPF1-202ENST00000594243 ARAP2Q8WZ64 1704 aa18.46■□□□□ 0.55
UPF1-202ENST00000594243 TRAF5O00463 557 aa18.46■□□□□ 0.55
UPF1-202ENST00000594243 UQCRFS1P1P0C7P4 283 aa18.46■□□□□ 0.55
UPF1-202ENST00000594243 AAMPQ13685 434 aa18.46■□□□□ 0.55
UPF1-202ENST00000594243 ZBED3Q96IU2 234 aaPredicted RBP18.46■□□□□ 0.55
UPF1-202ENST00000594243 ASTN2O75129 1339 aaPredicted RBP18.46■□□□□ 0.55
UPF1-202ENST00000594243 PDS5AQ29RF7 1337 aaKnown RBP18.46■□□□□ 0.55
UPF1-202ENST00000594243 SALL1Q9NSC2 1324 aa18.46■□□□□ 0.55
UPF1-202ENST00000594243 ARID4AP29374 1257 aaPredicted RBP18.45■□□□□ 0.54
UPF1-202ENST00000594243 RASGRF1Q13972 1273 aa18.45■□□□□ 0.54
UPF1-202ENST00000594243 TTC39AQ5SRH9 613 aa18.45■□□□□ 0.54
UPF1-202ENST00000594243 CLASRPQ8N2M8 674 aaKnown RBP18.45■□□□□ 0.54
UPF1-202ENST00000594243 EAF2Q96CJ1 260 aaPredicted RBP18.45■□□□□ 0.54
UPF1-202ENST00000594243 SPDYE2BA6NHP3 402 aa18.44■□□□□ 0.54
UPF1-202ENST00000594243 LDHBP07195 334 aaKnown RBP18.44■□□□□ 0.54
UPF1-202ENST00000594243 SPDYE6P0CI01 402 aa18.44■□□□□ 0.54
UPF1-202ENST00000594243 CRKP46108 304 aa18.44■□□□□ 0.54
UPF1-202ENST00000594243 GRIK5Q16478 980 aa18.44■□□□□ 0.54
UPF1-202ENST00000594243 SPTY2D1Q68D10 685 aaPredicted RBP18.44■□□□□ 0.54
UPF1-202ENST00000594243 TEKT1Q969V4 418 aa18.44■□□□□ 0.54
UPF1-202ENST00000594243 PRMT6Q96LA8 375 aaPredicted RBP18.44■□□□□ 0.54
UPF1-202ENST00000594243 DBNDD2Q9BQY9 259 aa18.44■□□□□ 0.54
UPF1-202ENST00000594243 CCDC8Q9H0W5 538 aaPredicted RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms