RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	KBTBD3	Q8NAB2	608 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	MLKL	Q8NB16	471 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	PI4K2B	Q8TCG2	481 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	CCDC12	Q8WUD4	166 aa	Predicted RBP	4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	RPGRIP1	Q96KN7	1286 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	RASSF4	Q9H2L5	321 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	GNL3L	Q9NVN8	582 aa	Known RBP	4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	PAG1	Q9NWQ8	432 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	ZRANB1	Q9UGI0	708 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	PYCARD	Q9ULZ3	195 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	TTF2	Q9UNY4	1162 aa	Known RBP	4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	MORC2	Q9Y6X9	1032 aa	Predicted RBP	4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	FER1L4	A9Z1Z3	1794 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	ANKAR	Q7Z5J8	1434 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	ADAMTSL3	P82987	1691 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	PREX1	Q8TCU6	1659 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	USP31	Q70CQ4	1352 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	TMEM2	Q9UHN6	1383 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	DIP2C	Q9Y2E4	1556 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790		H0YHG0	523 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	CLSTN1	O94985	981 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	UQCRFS1P1	P0C7P4	283 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	FBLN1	P23142	703 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	PPP1R2	P41236	205 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	EIF4A1	P60842	406 aa	Known RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	PPP2R5B	Q15173	497 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	NECTIN1	Q15223	517 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	AXDND1	Q5T1B0	1012 aa	Predicted RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	KRI1	Q8N9T8	703 aa	Known RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	IQCD	Q96DY2	449 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	BAG1	Q99933	345 aa	Predicted RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	TEX13A	Q9BXU3	409 aa	Predicted RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	KRT23	Q9C075	422 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	GPR108	Q9NPR9	543 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	CWC25	Q9NXE8	425 aa	Predicted RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	RTEL1	Q9NZ71	1219 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	KIAA1468	Q9P260	1216 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	SIGLEC1	Q9BZZ2	1709 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790		A0A087WZG4	1122 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	KLF18	A0A0U1RQI7	1052 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	GOLGA8A	A7E2F4	631 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	USO1	O60763	962 aa	Known RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	LIG1	P18858	919 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	CCT2	P78371	535 aa	Known RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	FANCC	Q00597	558 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	IFNL2	Q8IZJ0	200 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	ZFP91	Q96JP5	570 aa	Predicted RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	TMEM87B	Q96K49	555 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	LARP6	Q9BRS8	491 aa	Known RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	UBAC1	Q9BSL1	405 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	TPCN1	Q9ULQ1	816 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	SLC12A7	Q9Y666	1083 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	CRB1	P82279	1406 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	PTPRU	Q92729	1446 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	MAP2	P11137	1827 aa	Known RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	ERLIN2	O94905	339 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	MYL6B	P14649	208 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	CMA1	P23946	247 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	EVC	P57679	992 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	KRT83	P78385	493 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	FKBP4	Q02790	459 aa	Known RBP eCLIP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	ELF2	Q15723	593 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	ESCO1	Q5FWF5	840 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	CCDC181	Q5TID7	509 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	ANO1	Q5XXA6	986 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	CYB5RL	Q6IPT4	315 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	NBPF11	Q86T75	865 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	KIAA1328	Q86T90	577 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	ANKLE2	Q86XL3	938 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	FAM177A1	Q8N128	213 aa	Predicted RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	SMARCC1	Q92922	1105 aa	Predicted RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	AIDA	Q96BJ3	306 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	METTL22	Q9BUU2	404 aa	Predicted RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	OSBPL5	Q9H0X9	879 aa	Predicted RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	POLR3E	Q9NVU0	708 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	NSFL1C	Q9UNZ2	370 aa	Known RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	POLR3G	O15318	223 aa	Predicted RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	RNMT	O43148	476 aa	Known RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	ZBTB43	O43298	467 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	GNAT2	P19087	354 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	PPP2R3A	Q06190	1150 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	NCBP1	Q09161	790 aa	Known RBP	4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	SPA17	Q15506	151 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	TNNI3K	Q59H18	835 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	RILPL1	Q5EBL4	403 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	RABGGTA	Q92696	567 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	ALG1	Q9BT22	464 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	CNNM1	Q9NRU3	951 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	FPGT-TNNI3K	V9GXZ4	949 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	SPATA31D1	Q6ZQQ2	1576 aa		4.04	□□□□□ -1.76
VMP1-216	ENST00000592790	AGL	P35573	1532 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	SH3TC1	Q8TE82	1336 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	NRK	Q7Z2Y5	1582 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	TECPR2	O15040	1411 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	AKR1B15	C9JRZ8	316 aa	Predicted RBP	4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	FOXO3	O43524	673 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	OPA1	O60313	960 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	STX10	O60499	249 aa		4.03	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms