RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 PGAP2Q9UHJ9 254 aa14.72□□□□□ -0.05
LIG3-213ENST00000590630 NOP58Q9Y2X3 529 aaKnown RBP14.72□□□□□ -0.05
LIG3-213ENST00000590630 TRPM7Q96QT4 1865 aa14.72□□□□□ -0.05
LIG3-213ENST00000590630 HMMRO75330 724 aa14.71□□□□□ -0.05
LIG3-213ENST00000590630 FRAT2O75474 233 aaPredicted RBP14.71□□□□□ -0.05
LIG3-213ENST00000590630 SURF6O75683 361 aaKnown RBP14.71□□□□□ -0.05
LIG3-213ENST00000590630 HIRAP54198 1017 aaPredicted RBP14.71□□□□□ -0.05
LIG3-213ENST00000590630 OS9Q13438 667 aaPredicted RBP14.71□□□□□ -0.05
LIG3-213ENST00000590630 KIF4BQ2VIQ3 1234 aa14.71□□□□□ -0.05
LIG3-213ENST00000590630 TBC1D10BQ4KMP7 808 aaPredicted RBP14.71□□□□□ -0.05
LIG3-213ENST00000590630 MAP1SQ66K74 1059 aaPredicted RBP14.71□□□□□ -0.05
LIG3-213ENST00000590630 CNTROBQ8N137 903 aa14.71□□□□□ -0.05
LIG3-213ENST00000590630 MYOZ2Q9NPC6 264 aa14.71□□□□□ -0.05
LIG3-213ENST00000590630 ECM29Q5VYK3 1845 aa14.71□□□□□ -0.06
LIG3-213ENST00000590630 A0A1B0GUL7 405 aa14.7□□□□□ -0.06
LIG3-213ENST00000590630 ITGBL1O95965 494 aaPredicted RBP14.7□□□□□ -0.06
LIG3-213ENST00000590630 EGFRP00533 1210 aa14.7□□□□□ -0.06
LIG3-213ENST00000590630 APLP1P51693 650 aa14.7□□□□□ -0.06
LIG3-213ENST00000590630 KIAA0825Q8IV33 1275 aa14.7□□□□□ -0.06
LIG3-213ENST00000590630 CERS5Q8N5B7 392 aa14.7□□□□□ -0.06
LIG3-213ENST00000590630 TBC1D22AQ8WUA7 517 aa14.7□□□□□ -0.06
LIG3-213ENST00000590630 GNL3LQ9NVN8 582 aaKnown RBP14.7□□□□□ -0.06
LIG3-213ENST00000590630 HDAC9Q9UKV0 1011 aa14.7□□□□□ -0.06
LIG3-213ENST00000590630 PASKQ96RG2 1323 aa14.69□□□□□ -0.06
LIG3-213ENST00000590630 ZBTB22O15209 634 aa14.69□□□□□ -0.06
LIG3-213ENST00000590630 TIMM10P62072 90 aa14.69□□□□□ -0.06
LIG3-213ENST00000590630 HSP90AB4PQ58FF6 505 aa14.69□□□□□ -0.06
LIG3-213ENST00000590630 MFSD14BQ5SR56 506 aa14.69□□□□□ -0.06
LIG3-213ENST00000590630 RBM26Q5T8P6 1007 aaKnown RBP14.69□□□□□ -0.06
LIG3-213ENST00000590630 GPR108Q9NPR9 543 aa14.69□□□□□ -0.06
LIG3-213ENST00000590630 IQSEC3Q9UPP2 1182 aaPredicted RBP14.69□□□□□ -0.06
LIG3-213ENST00000590630 JAG2Q9Y219 1238 aa14.69□□□□□ -0.06
LIG3-213ENST00000590630 SEMA3EO15041 775 aa14.68□□□□□ -0.06
LIG3-213ENST00000590630 ERC1Q8IUD2 1116 aa14.68□□□□□ -0.06
LIG3-213ENST00000590630 XAGE2Q96GT9 111 aa14.68□□□□□ -0.06
LIG3-213ENST00000590630 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.68□□□□□ -0.06
LIG3-213ENST00000590630 PCNTO95613 3336 aa14.68□□□□□ -0.06
LIG3-213ENST00000590630 ADORA1P30542 326 aa14.67□□□□□ -0.06
LIG3-213ENST00000590630 PHKA1P46020 1223 aa14.67□□□□□ -0.06
LIG3-213ENST00000590630 CHAF1AQ13111 956 aaPredicted RBP14.67□□□□□ -0.06
LIG3-213ENST00000590630 CCDC102BQ68D86 513 aa14.67□□□□□ -0.06
LIG3-213ENST00000590630 CDC37L1Q7L3B6 337 aa14.67□□□□□ -0.06
LIG3-213ENST00000590630 SIRT2Q8IXJ6 389 aa14.67□□□□□ -0.06
LIG3-213ENST00000590630 DCPSQ96C86 337 aaKnown RBP14.67□□□□□ -0.06
LIG3-213ENST00000590630 NEUROD6Q96NK8 337 aa14.67□□□□□ -0.06
LIG3-213ENST00000590630 COL1A1P02452 1464 aaPredicted RBP14.66□□□□□ -0.06
LIG3-213ENST00000590630 SCARF1Q14162 830 aa14.66□□□□□ -0.06
LIG3-213ENST00000590630 TNNI3KQ59H18 835 aa14.66□□□□□ -0.06
LIG3-213ENST00000590630 WDR66Q8TBY9 1149 aa14.66□□□□□ -0.06
LIG3-213ENST00000590630 GGA3Q9NZ52 723 aa14.66□□□□□ -0.06
LIG3-213ENST00000590630 DENND2AQ9ULE3 1009 aa14.66□□□□□ -0.06
LIG3-213ENST00000590630 EXOC6BQ9Y2D4 811 aa14.66□□□□□ -0.06
LIG3-213ENST00000590630 SUGT1Q9Y2Z0 365 aa14.66□□□□□ -0.06
LIG3-213ENST00000590630 FPGT-TNNI3KV9GXZ4 949 aa14.66□□□□□ -0.06
LIG3-213ENST00000590630 PDS5AQ29RF7 1337 aaKnown RBP14.66□□□□□ -0.06
LIG3-213ENST00000590630 PITPNM2Q9BZ72 1349 aa14.66□□□□□ -0.06
LIG3-213ENST00000590630 F8W031 263 aaPredicted RBP14.65□□□□□ -0.06
LIG3-213ENST00000590630 WNT10BO00744 389 aa14.65□□□□□ -0.06
LIG3-213ENST00000590630 DLGAP5Q15398 846 aa14.65□□□□□ -0.06
LIG3-213ENST00000590630 GORABQ5T7V8 394 aa14.65□□□□□ -0.06
LIG3-213ENST00000590630 MTMR14Q8NCE2 650 aa14.65□□□□□ -0.06
LIG3-213ENST00000590630 CREBZFQ9NS37 354 aa14.65□□□□□ -0.06
LIG3-213ENST00000590630 SERPINA10Q9UK55 444 aa14.65□□□□□ -0.06
LIG3-213ENST00000590630 TTF2Q9UNY4 1162 aaKnown RBP14.65□□□□□ -0.06
LIG3-213ENST00000590630 RASGRF1Q13972 1273 aa14.64□□□□□ -0.07
LIG3-213ENST00000590630 NBPF9Q3BBW0 867 aa14.64□□□□□ -0.07
LIG3-213ENST00000590630 ANGEL2Q5VTE6 544 aaKnown RBP14.64□□□□□ -0.07
LIG3-213ENST00000590630 KRT26Q7Z3Y9 468 aa14.64□□□□□ -0.07
LIG3-213ENST00000590630 SULF1Q8IWU6 871 aa14.64□□□□□ -0.07
LIG3-213ENST00000590630 ZBED3Q96IU2 234 aaPredicted RBP14.64□□□□□ -0.07
LIG3-213ENST00000590630 GLIS2Q9BZE0 524 aaPredicted RBP14.64□□□□□ -0.07
LIG3-213ENST00000590630 MAST3O60307 1309 aa14.64□□□□□ -0.07
LIG3-213ENST00000590630 SALL1Q9NSC2 1324 aa14.64□□□□□ -0.07
LIG3-213ENST00000590630 AKAP11Q9UKA4 1901 aa14.63□□□□□ -0.07
LIG3-213ENST00000590630 TMEM88BA6NKF7 163 aa14.63□□□□□ -0.07
LIG3-213ENST00000590630 TRAF5O00463 557 aa14.63□□□□□ -0.07
LIG3-213ENST00000590630 RAB11FIP3O75154 756 aa14.63□□□□□ -0.07
LIG3-213ENST00000590630 ARID4AP29374 1257 aaPredicted RBP14.63□□□□□ -0.07
LIG3-213ENST00000590630 HDLBPQ00341 1268 aaKnown RBP14.63□□□□□ -0.07
LIG3-213ENST00000590630 CFAP100Q494V2 611 aa14.63□□□□□ -0.07
LIG3-213ENST00000590630 ZGPATQ8N5A5 531 aaKnown RBP14.63□□□□□ -0.07
LIG3-213ENST00000590630 KIF1BPQ96EK5 621 aa14.63□□□□□ -0.07
LIG3-213ENST00000590630 ASTN2O75129 1339 aaPredicted RBP14.63□□□□□ -0.07
LIG3-213ENST00000590630 SPDYE2BA6NHP3 402 aa14.62□□□□□ -0.07
LIG3-213ENST00000590630 MYO1BO43795 1136 aa14.62□□□□□ -0.07
LIG3-213ENST00000590630 UQCRFS1P1P0C7P4 283 aa14.62□□□□□ -0.07
LIG3-213ENST00000590630 SPDYE6P0CI01 402 aa14.62□□□□□ -0.07
LIG3-213ENST00000590630 RBM5P52756 815 aaKnown RBP eCLIP14.62□□□□□ -0.07
LIG3-213ENST00000590630 AAMPQ13685 434 aa14.62□□□□□ -0.07
LIG3-213ENST00000590630 CCDC158Q5M9N0 1113 aa14.62□□□□□ -0.07
LIG3-213ENST00000590630 USP48Q86UV5 1035 aa14.62□□□□□ -0.07
LIG3-213ENST00000590630 RHPN1Q8TCX5 695 aa14.62□□□□□ -0.07
LIG3-213ENST00000590630 CRBNQ96SW2 442 aa14.62□□□□□ -0.07
LIG3-213ENST00000590630 MRIQ9BWK5 157 aa14.62□□□□□ -0.07
LIG3-213ENST00000590630 MYH2Q9UKX2 1941 aa14.62□□□□□ -0.07
LIG3-213ENST00000590630 GRIK5Q16478 980 aa14.61□□□□□ -0.07
LIG3-213ENST00000590630 APOBEC3FQ8IUX4 373 aaKnown RBP14.61□□□□□ -0.07
LIG3-213ENST00000590630 TEKT1Q969V4 418 aa14.61□□□□□ -0.07
LIG3-213ENST00000590630 EAF2Q96CJ1 260 aaPredicted RBP14.61□□□□□ -0.07
LIG3-213ENST00000590630 DBNDD2Q9BQY9 259 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms