RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 LARGE2Q8N3Y3 721 aa12.75□□□□□ -0.37
VPS4B-204ENST00000589604 SUPT20HQ8NEM7 779 aa12.75□□□□□ -0.37
VPS4B-204ENST00000589604 CEP126Q9P2H0 1117 aa12.75□□□□□ -0.37
VPS4B-204ENST00000589604 ZNF541Q9H0D2 1346 aa12.75□□□□□ -0.37
VPS4B-204ENST00000589604 CDC45O75419 566 aa12.74□□□□□ -0.37
VPS4B-204ENST00000589604 GLRX3O76003 335 aaKnown RBP12.74□□□□□ -0.37
VPS4B-204ENST00000589604 GYG1P46976 350 aa12.74□□□□□ -0.37
VPS4B-204ENST00000589604 KCNJ4P48050 445 aa12.74□□□□□ -0.37
VPS4B-204ENST00000589604 PUM3Q15397 648 aaKnown RBP12.74□□□□□ -0.37
VPS4B-204ENST00000589604 C15orf52Q6ZUT6 534 aaKnown RBP12.74□□□□□ -0.37
VPS4B-204ENST00000589604 FAM84BQ96KN1 310 aaPredicted RBP12.74□□□□□ -0.37
VPS4B-204ENST00000589604 A0A1B0GUL7 405 aa12.73□□□□□ -0.37
VPS4B-204ENST00000589604 FZD9O00144 591 aa12.73□□□□□ -0.37
VPS4B-204ENST00000589604 ATP5JP18859 108 aa12.73□□□□□ -0.37
VPS4B-204ENST00000589604 ATP2B3Q16720 1220 aa12.73□□□□□ -0.37
VPS4B-204ENST00000589604 ZC3H12CQ9C0D7 883 aaKnown RBP12.73□□□□□ -0.37
VPS4B-204ENST00000589604 ERC2O15083 957 aa12.73□□□□□ -0.37
VPS4B-204ENST00000589604 ECE2O60344 883 aa12.73□□□□□ -0.37
VPS4B-204ENST00000589604 MAP4K4O95819 1239 aaPredicted RBP12.73□□□□□ -0.37
VPS4B-204ENST00000589604 BCAMP50895 628 aa12.73□□□□□ -0.37
VPS4B-204ENST00000589604 FBXO33Q7Z6M2 555 aa12.73□□□□□ -0.37
VPS4B-204ENST00000589604 LPIN2Q92539 896 aa12.73□□□□□ -0.37
VPS4B-204ENST00000589604 EYA3Q99504 573 aa12.73□□□□□ -0.37
VPS4B-204ENST00000589604 VPS33BQ9H267 617 aa12.73□□□□□ -0.37
VPS4B-204ENST00000589604 GPATCH3Q96I76 525 aa12.72□□□□□ -0.37
VPS4B-204ENST00000589604 AKAP2Q9Y2D5 859 aa12.72□□□□□ -0.37
VPS4B-204ENST00000589604 MYO5AQ9Y4I1 1855 aaKnown RBP12.71□□□□□ -0.37
VPS4B-204ENST00000589604 COL1A1P02452 1464 aaPredicted RBP12.71□□□□□ -0.37
VPS4B-204ENST00000589604 RAD17O75943 681 aa12.71□□□□□ -0.37
VPS4B-204ENST00000589604 CHMLP26374 656 aa12.71□□□□□ -0.37
VPS4B-204ENST00000589604 CXCL9Q07325 125 aa12.71□□□□□ -0.37
VPS4B-204ENST00000589604 NIM1KQ8IY84 436 aa12.71□□□□□ -0.37
VPS4B-204ENST00000589604 XAGE2Q96GT9 111 aa12.71□□□□□ -0.37
VPS4B-204ENST00000589604 NEUROD6Q96NK8 337 aa12.71□□□□□ -0.37
VPS4B-204ENST00000589604 BOLA2Q9H3K6 86 aa12.71□□□□□ -0.37
VPS4B-204ENST00000589604 CD209Q9NNX6 404 aa12.71□□□□□ -0.37
VPS4B-204ENST00000589604 ZNRF3Q9ULT6 936 aa12.71□□□□□ -0.37
VPS4B-204ENST00000589604 IQSEC3Q9UPP2 1182 aaPredicted RBP12.71□□□□□ -0.37
VPS4B-204ENST00000589604 PSME4Q14997 1843 aa12.71□□□□□ -0.37
VPS4B-204ENST00000589604 TRIM6-TRIM34B2RNG4 842 aa12.7□□□□□ -0.38
VPS4B-204ENST00000589604 SLC5A1P13866 664 aa12.7□□□□□ -0.38
VPS4B-204ENST00000589604 PHKA1P46020 1223 aa12.7□□□□□ -0.38
VPS4B-204ENST00000589604 JDP2Q8WYK2 163 aa12.7□□□□□ -0.38
VPS4B-204ENST00000589604 RILPL2Q969X0 211 aa12.7□□□□□ -0.38
VPS4B-204ENST00000589604 MXD3Q9BW11 206 aa12.7□□□□□ -0.38
VPS4B-204ENST00000589604 IFIT1P09914 478 aaKnown RBP12.7□□□□□ -0.38
VPS4B-204ENST00000589604 IL1R1P14778 569 aa12.7□□□□□ -0.38
VPS4B-204ENST00000589604 HIBADHP31937 336 aaKnown RBP12.7□□□□□ -0.38
VPS4B-204ENST00000589604 HAUS7Q99871 368 aa12.7□□□□□ -0.38
VPS4B-204ENST00000589604 COA1Q9GZY4 146 aa12.7□□□□□ -0.38
VPS4B-204ENST00000589604 JAG2Q9Y219 1238 aa12.7□□□□□ -0.38
VPS4B-204ENST00000589604 PSMD14O00487 310 aa12.69□□□□□ -0.38
VPS4B-204ENST00000589604 DDNO94850 711 aaPredicted RBP12.69□□□□□ -0.38
VPS4B-204ENST00000589604 MFAP1P55081 439 aaKnown RBP12.69□□□□□ -0.38
VPS4B-204ENST00000589604 TDRD7Q8NHU6 1098 aaKnown RBP12.69□□□□□ -0.38
VPS4B-204ENST00000589604 EDC3Q96F86 508 aaKnown RBP12.69□□□□□ -0.38
VPS4B-204ENST00000589604 TBC1D32Q96NH3 1257 aa12.69□□□□□ -0.38
VPS4B-204ENST00000589604 IL25Q9H293 177 aa12.69□□□□□ -0.38
VPS4B-204ENST00000589604 MYH7P12883 1935 aa12.68□□□□□ -0.38
VPS4B-204ENST00000589604 SCARF1Q14162 830 aa12.68□□□□□ -0.38
VPS4B-204ENST00000589604 CCDC102BQ68D86 513 aa12.68□□□□□ -0.38
VPS4B-204ENST00000589604 ZNF804AQ7Z570 1209 aa12.68□□□□□ -0.38
VPS4B-204ENST00000589604 CNTROBQ8N137 903 aa12.68□□□□□ -0.38
VPS4B-204ENST00000589604 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.68□□□□□ -0.38
VPS4B-204ENST00000589604 EVI5LQ96CN4 794 aa12.68□□□□□ -0.38
VPS4B-204ENST00000589604 NDUFB9Q9Y6M9 179 aa12.68□□□□□ -0.38
VPS4B-204ENST00000589604 SHTN1A0MZ66 631 aa12.67□□□□□ -0.38
VPS4B-204ENST00000589604 POTECB2RU33 542 aa12.67□□□□□ -0.38
VPS4B-204ENST00000589604 GRIK5Q16478 980 aa12.67□□□□□ -0.38
VPS4B-204ENST00000589604 PI16Q6UXB8 463 aa12.67□□□□□ -0.38
VPS4B-204ENST00000589604 PODNQ7Z5L7 613 aa12.67□□□□□ -0.38
VPS4B-204ENST00000589604 CERS5Q8N5B7 392 aa12.67□□□□□ -0.38
VPS4B-204ENST00000589604 ESYT1Q9BSJ8 1104 aa12.67□□□□□ -0.38
VPS4B-204ENST00000589604 ZBTB12Q9Y330 459 aaPredicted RBP12.67□□□□□ -0.38
VPS4B-204ENST00000589604 ZC3H4Q9UPT8 1303 aaKnown RBP12.67□□□□□ -0.38
VPS4B-204ENST00000589604 GLTPD2A6NH11 291 aa12.67□□□□□ -0.38
VPS4B-204ENST00000589604 G3V3G9 751 aa12.67□□□□□ -0.38
VPS4B-204ENST00000589604 GTF2IP78347 998 aa12.67□□□□□ -0.38
VPS4B-204ENST00000589604 DACT2Q5SW24 774 aa12.67□□□□□ -0.38
VPS4B-204ENST00000589604 DCAF8Q5TAQ9 597 aa12.67□□□□□ -0.38
VPS4B-204ENST00000589604 CIAPIN1Q6FI81 312 aa12.67□□□□□ -0.38
VPS4B-204ENST00000589604 ZNF526Q8TF50 670 aaPredicted RBP12.67□□□□□ -0.38
VPS4B-204ENST00000589604 ZNF512BQ96KM6 892 aaPredicted RBP12.67□□□□□ -0.38
VPS4B-204ENST00000589604 GJA3Q9Y6H8 435 aa12.67□□□□□ -0.38
VPS4B-204ENST00000589604 MYH13Q9UKX3 1938 aa12.66□□□□□ -0.38
VPS4B-204ENST00000589604 VIL1P09327 827 aaKnown RBP12.66□□□□□ -0.38
VPS4B-204ENST00000589604 EIF6P56537 245 aaKnown RBP12.66□□□□□ -0.38
VPS4B-204ENST00000589604 RASGRF1Q13972 1273 aa12.66□□□□□ -0.38
VPS4B-204ENST00000589604 CAVIN4Q5BKX8 364 aa12.66□□□□□ -0.38
VPS4B-204ENST00000589604 GMLQ99445 158 aa12.66□□□□□ -0.38
VPS4B-204ENST00000589604 USP26Q9BXU7 913 aa12.66□□□□□ -0.38
VPS4B-204ENST00000589604 WDR90Q96KV7 1748 aa12.65□□□□□ -0.38
VPS4B-204ENST00000589604 DOCK2Q92608 1830 aa12.65□□□□□ -0.38
VPS4B-204ENST00000589604 USP17L3A6NCW0 530 aa12.65□□□□□ -0.38
VPS4B-204ENST00000589604 USP17L4A6NCW7 530 aa12.65□□□□□ -0.38
VPS4B-204ENST00000589604 ARID4AP29374 1257 aaPredicted RBP12.65□□□□□ -0.38
VPS4B-204ENST00000589604 MCAMP43121 646 aa12.65□□□□□ -0.38
VPS4B-204ENST00000589604 RBM25P49756 843 aaKnown RBP12.65□□□□□ -0.38
VPS4B-204ENST00000589604 GMPSP49915 693 aaPredicted RBP12.65□□□□□ -0.38
VPS4B-204ENST00000589604 SCNN1DP51172 638 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms