RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 GORABQ5T7V8 394 aa13.49□□□□□ -0.25
CLIP3-203ENST00000586457 ANGEL2Q5VTE6 544 aaKnown RBP13.49□□□□□ -0.25
CLIP3-203ENST00000586457 C2orf69Q8N8R5 385 aa13.49□□□□□ -0.25
CLIP3-203ENST00000586457 GMLQ99445 158 aa13.49□□□□□ -0.25
CLIP3-203ENST00000586457 COPRSQ9NQ92 184 aa13.49□□□□□ -0.25
CLIP3-203ENST00000586457 GGA3Q9NZ52 723 aa13.49□□□□□ -0.25
CLIP3-203ENST00000586457 EGFRP00533 1210 aa13.48□□□□□ -0.25
CLIP3-203ENST00000586457 NF2P35240 595 aa13.48□□□□□ -0.25
CLIP3-203ENST00000586457 ECE1P42892 770 aa13.48□□□□□ -0.25
CLIP3-203ENST00000586457 RFX5P48382 616 aaPredicted RBP13.48□□□□□ -0.25
CLIP3-203ENST00000586457 FKBP1AP62942 108 aaKnown RBP13.48□□□□□ -0.25
CLIP3-203ENST00000586457 MFSD14BQ5SR56 506 aa13.48□□□□□ -0.25
CLIP3-203ENST00000586457 TDRD7Q8NHU6 1098 aaKnown RBP13.48□□□□□ -0.25
CLIP3-203ENST00000586457 TBC1D22AQ8WUA7 517 aa13.48□□□□□ -0.25
CLIP3-203ENST00000586457 IQSEC3Q9UPP2 1182 aaPredicted RBP13.48□□□□□ -0.25
CLIP3-203ENST00000586457 PA2G4Q9UQ80 394 aaKnown RBP13.48□□□□□ -0.25
CLIP3-203ENST00000586457 BCAMP50895 628 aa13.47□□□□□ -0.25
CLIP3-203ENST00000586457 ATG9AQ7Z3C6 839 aa13.47□□□□□ -0.25
CLIP3-203ENST00000586457 FBXO33Q7Z6M2 555 aa13.47□□□□□ -0.25
CLIP3-203ENST00000586457 NEUROD6Q96NK8 337 aa13.47□□□□□ -0.25
CLIP3-203ENST00000586457 TTF2Q9UNY4 1162 aaKnown RBP13.47□□□□□ -0.25
CLIP3-203ENST00000586457 SCN9AQ15858 1988 aa13.46□□□□□ -0.25
CLIP3-203ENST00000586457 FMR1Q06787 632 aaKnown RBP eCLIP13.46□□□□□ -0.25
CLIP3-203ENST00000586457 MTX1Q13505 466 aa13.46□□□□□ -0.25
CLIP3-203ENST00000586457 TTLL12Q14166 644 aaPredicted RBP13.46□□□□□ -0.25
CLIP3-203ENST00000586457 NBPF9Q3BBW0 867 aa13.46□□□□□ -0.25
CLIP3-203ENST00000586457 VGLL2Q8N8G2 317 aa13.46□□□□□ -0.25
CLIP3-203ENST00000586457 PANK1Q8TE04 598 aa13.46□□□□□ -0.25
CLIP3-203ENST00000586457 ZNF609O15014 1411 aa13.46□□□□□ -0.26
CLIP3-203ENST00000586457 ADAMTSL1Q8N6G6 1762 aa13.45□□□□□ -0.26
CLIP3-203ENST00000586457 FAM205AQ6ZU69 1335 aa13.45□□□□□ -0.26
CLIP3-203ENST00000586457 PITPNM2Q9BZ72 1349 aa13.45□□□□□ -0.26
CLIP3-203ENST00000586457 ADM5C9JUS6 153 aa13.45□□□□□ -0.26
CLIP3-203ENST00000586457 WNT10BO00744 389 aa13.45□□□□□ -0.26
CLIP3-203ENST00000586457 ZBTB7BO15156 539 aaPredicted RBP13.45□□□□□ -0.26
CLIP3-203ENST00000586457 SURF6O75683 361 aaKnown RBP13.45□□□□□ -0.26
CLIP3-203ENST00000586457 ATP8B2P98198 1209 aa13.45□□□□□ -0.26
CLIP3-203ENST00000586457 CFAP100Q494V2 611 aa13.45□□□□□ -0.26
CLIP3-203ENST00000586457 CST9Q5W186 159 aa13.45□□□□□ -0.26
CLIP3-203ENST00000586457 APOBEC3FQ8IUX4 373 aaKnown RBP13.45□□□□□ -0.26
CLIP3-203ENST00000586457 WDR66Q8TBY9 1149 aa13.45□□□□□ -0.26
CLIP3-203ENST00000586457 AIDAQ96BJ3 306 aa13.45□□□□□ -0.26
CLIP3-203ENST00000586457 BEGAINQ9BUH8 593 aa13.45□□□□□ -0.26
CLIP3-203ENST00000586457 C1orf115Q9H7X2 142 aa13.45□□□□□ -0.26
CLIP3-203ENST00000586457 IRS2Q9Y4H2 1338 aa13.44□□□□□ -0.26
CLIP3-203ENST00000586457 FGFR2P21802 821 aa13.44□□□□□ -0.26
CLIP3-203ENST00000586457 VEGFBP49765 207 aa13.44□□□□□ -0.26
CLIP3-203ENST00000586457 TIMM10P62072 90 aa13.44□□□□□ -0.26
CLIP3-203ENST00000586457 TFCP2Q12800 502 aa13.44□□□□□ -0.26
CLIP3-203ENST00000586457 VEZTQ9HBM0 779 aa13.44□□□□□ -0.26
CLIP3-203ENST00000586457 GBA2Q9HCG7 927 aaPredicted RBP13.44□□□□□ -0.26
CLIP3-203ENST00000586457 DDX19BQ9UMR2 479 aa13.44□□□□□ -0.26
CLIP3-203ENST00000586457 TLL2Q9Y6L7 1015 aa13.44□□□□□ -0.26
CLIP3-203ENST00000586457 CEP350Q5VT06 3117 aa13.44□□□□□ -0.26
CLIP3-203ENST00000586457 CNTNAP1P78357 1384 aa13.44□□□□□ -0.26
CLIP3-203ENST00000586457 MAST3O60307 1309 aa13.43□□□□□ -0.26
CLIP3-203ENST00000586457 RASSF10A6NK89 507 aa13.43□□□□□ -0.26
CLIP3-203ENST00000586457 RLBP1P12271 317 aa13.43□□□□□ -0.26
CLIP3-203ENST00000586457 HUNKP57058 714 aa13.43□□□□□ -0.26
CLIP3-203ENST00000586457 MVPQ14764 893 aaKnown RBP13.43□□□□□ -0.26
CLIP3-203ENST00000586457 CERS5Q8N5B7 392 aa13.43□□□□□ -0.26
CLIP3-203ENST00000586457 JMYQ8N9B5 988 aa13.43□□□□□ -0.26
CLIP3-203ENST00000586457 CDCA5Q96FF9 252 aa13.43□□□□□ -0.26
CLIP3-203ENST00000586457 SERPINA10Q9UK55 444 aa13.43□□□□□ -0.26
CLIP3-203ENST00000586457 DENND2AQ9ULE3 1009 aa13.43□□□□□ -0.26
CLIP3-203ENST00000586457 COG6Q9Y2V7 657 aa13.43□□□□□ -0.26
CLIP3-203ENST00000586457 ASTN2O75129 1339 aaPredicted RBP13.42□□□□□ -0.26
CLIP3-203ENST00000586457 WDR33Q9C0J8 1336 aaKnown RBP13.42□□□□□ -0.26
CLIP3-203ENST00000586457 PSME4Q14997 1843 aa13.42□□□□□ -0.26
CLIP3-203ENST00000586457 PNMA6EA0A0J9YXQ4 647 aa13.42□□□□□ -0.26
CLIP3-203ENST00000586457 SEMA3EO15041 775 aa13.42□□□□□ -0.26
CLIP3-203ENST00000586457 HMMRO75330 724 aa13.42□□□□□ -0.26
CLIP3-203ENST00000586457 TNNI2P48788 182 aa13.42□□□□□ -0.26
CLIP3-203ENST00000586457 SAPCD2Q86UD0 394 aa13.42□□□□□ -0.26
CLIP3-203ENST00000586457 ZGPATQ8N5A5 531 aaKnown RBP13.42□□□□□ -0.26
CLIP3-203ENST00000586457 TEKT1Q969V4 418 aa13.42□□□□□ -0.26
CLIP3-203ENST00000586457 CAPNS2Q96L46 248 aa13.42□□□□□ -0.26
CLIP3-203ENST00000586457 TMOD2Q9NZR1 351 aa13.42□□□□□ -0.26
CLIP3-203ENST00000586457 SUGT1Q9Y2Z0 365 aa13.42□□□□□ -0.26
CLIP3-203ENST00000586457 A0A1B0GUL7 405 aa13.41□□□□□ -0.26
CLIP3-203ENST00000586457 CLRN2A0PK11 232 aa13.41□□□□□ -0.26
CLIP3-203ENST00000586457 SPDYE2BA6NHP3 402 aa13.41□□□□□ -0.26
CLIP3-203ENST00000586457 LDHBP07195 334 aaKnown RBP13.41□□□□□ -0.26
CLIP3-203ENST00000586457 SPDYE6P0CI01 402 aa13.41□□□□□ -0.26
CLIP3-203ENST00000586457 MAP2K1Q02750 393 aaPredicted RBP13.41□□□□□ -0.26
CLIP3-203ENST00000586457 TNFAIP1Q13829 316 aa13.41□□□□□ -0.26
CLIP3-203ENST00000586457 HSP90AB4PQ58FF6 505 aa13.41□□□□□ -0.26
CLIP3-203ENST00000586457 CYP4F22Q6NT55 531 aa13.41□□□□□ -0.26
CLIP3-203ENST00000586457 DLK2Q6UY11 383 aa13.41□□□□□ -0.26
CLIP3-203ENST00000586457 MTMR14Q8NCE2 650 aa13.41□□□□□ -0.26
CLIP3-203ENST00000586457 HHIPL1Q96JK4 782 aa13.41□□□□□ -0.26
CLIP3-203ENST00000586457 SCAF8Q9UPN6 1271 aaKnown RBP13.41□□□□□ -0.26
CLIP3-203ENST00000586457 CRKP46108 304 aa13.4□□□□□ -0.26
CLIP3-203ENST00000586457 ZNF157P51786 506 aaPredicted RBP13.4□□□□□ -0.26
CLIP3-203ENST00000586457 FKBP1BP68106 108 aa13.4□□□□□ -0.26
CLIP3-203ENST00000586457 HDLBPQ00341 1268 aaKnown RBP13.4□□□□□ -0.26
CLIP3-203ENST00000586457 PDE3AQ14432 1141 aa13.4□□□□□ -0.26
CLIP3-203ENST00000586457 SUPT20HL1Q3ZLR7 823 aa13.4□□□□□ -0.26
CLIP3-203ENST00000586457 CCDC158Q5M9N0 1113 aa13.4□□□□□ -0.26
CLIP3-203ENST00000586457 SPTY2D1Q68D10 685 aaPredicted RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms