RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 C8orf76Q96K31 380 aa14.2□□□□□ -0.14
SHMT1-208ENST00000582352 BPIFA3Q9BQP9 254 aa14.2□□□□□ -0.14
SHMT1-208ENST00000582352 RNF113AO15541 343 aaKnown RBP14.2□□□□□ -0.14
SHMT1-208ENST00000582352 IFIT1P09914 478 aaKnown RBP14.2□□□□□ -0.14
SHMT1-208ENST00000582352 DHX8Q14562 1220 aaKnown RBP14.2□□□□□ -0.14
SHMT1-208ENST00000582352 TMC6Q7Z403 805 aa14.2□□□□□ -0.14
SHMT1-208ENST00000582352 PLBD2Q8NHP8 589 aa14.2□□□□□ -0.14
SHMT1-208ENST00000582352 XPO4Q9C0E2 1151 aaKnown RBP14.2□□□□□ -0.14
SHMT1-208ENST00000582352 DHX16O60231 1041 aaKnown RBP14.19□□□□□ -0.14
SHMT1-208ENST00000582352 YEATS4O95619 227 aa14.19□□□□□ -0.14
SHMT1-208ENST00000582352 TIMM10P62072 90 aa14.19□□□□□ -0.14
SHMT1-208ENST00000582352 FBXO38Q6PIJ6 1188 aa14.19□□□□□ -0.14
SHMT1-208ENST00000582352 IFNL2Q8IZJ0 200 aa14.19□□□□□ -0.14
SHMT1-208ENST00000582352 GPR108Q9NPR9 543 aa14.19□□□□□ -0.14
SHMT1-208ENST00000582352 POLR3EQ9NVU0 708 aa14.19□□□□□ -0.14
SHMT1-208ENST00000582352 IFNKQ9P0W0 207 aa14.19□□□□□ -0.14
SHMT1-208ENST00000582352 SPTLC2O15270 562 aa14.19□□□□□ -0.14
SHMT1-208ENST00000582352 SLC3A2P08195 630 aaKnown RBP14.19□□□□□ -0.14
SHMT1-208ENST00000582352 FDPSP14324 419 aaKnown RBP14.19□□□□□ -0.14
SHMT1-208ENST00000582352 IL15P40933 162 aaPredicted RBP14.19□□□□□ -0.14
SHMT1-208ENST00000582352 ATG9AQ7Z3C6 839 aa14.19□□□□□ -0.14
SHMT1-208ENST00000582352 CLIC4Q9Y696 253 aa14.19□□□□□ -0.14
SHMT1-208ENST00000582352 SPEF2Q9C093 1822 aa14.19□□□□□ -0.14
SHMT1-208ENST00000582352 TRPM3Q9HCF6 1732 aaPredicted RBP14.19□□□□□ -0.14
SHMT1-208ENST00000582352 POLR3DP05423 398 aaPredicted RBP14.18□□□□□ -0.14
SHMT1-208ENST00000582352 ZC3H6P61129 1189 aaKnown RBP14.18□□□□□ -0.14
SHMT1-208ENST00000582352 BRAPQ7Z569 592 aa14.18□□□□□ -0.14
SHMT1-208ENST00000582352 PPP1R13BQ96KQ4 1090 aa14.18□□□□□ -0.14
SHMT1-208ENST00000582352 GOLGA8BA8MQT2 603 aa14.18□□□□□ -0.14
SHMT1-208ENST00000582352 M0R2C6 588 aa14.18□□□□□ -0.14
SHMT1-208ENST00000582352 BIN1O00499 593 aa14.18□□□□□ -0.14
SHMT1-208ENST00000582352 FOXO4P98177 505 aa14.18□□□□□ -0.14
SHMT1-208ENST00000582352 E4F1Q66K89 784 aaPredicted RBP14.18□□□□□ -0.14
SHMT1-208ENST00000582352 TTLL5Q6EMB2 1281 aa14.18□□□□□ -0.14
SHMT1-208ENST00000582352 OTUD7BQ6GQQ9 843 aa14.18□□□□□ -0.14
SHMT1-208ENST00000582352 MEGF6O75095 1541 aa14.18□□□□□ -0.14
SHMT1-208ENST00000582352 LRRFIP1Q32MZ4 808 aaKnown RBP14.17□□□□□ -0.14
SHMT1-208ENST00000582352 SYNE3Q6ZMZ3 975 aa14.17□□□□□ -0.14
SHMT1-208ENST00000582352 FBXL16Q8N461 479 aa14.17□□□□□ -0.14
SHMT1-208ENST00000582352 LAMB4A4D0S4 1761 aa14.17□□□□□ -0.14
SHMT1-208ENST00000582352 PSDA5PKW4 1024 aaPredicted RBP14.17□□□□□ -0.14
SHMT1-208ENST00000582352 CPLX1O14810 134 aa14.17□□□□□ -0.14
SHMT1-208ENST00000582352 EVCP57679 992 aa14.17□□□□□ -0.14
SHMT1-208ENST00000582352 IMMTQ16891 758 aaKnown RBP14.17□□□□□ -0.14
SHMT1-208ENST00000582352 MYSM1Q5VVJ2 828 aa14.17□□□□□ -0.14
SHMT1-208ENST00000582352 ARMCX5Q6P1M9 558 aa14.17□□□□□ -0.14
SHMT1-208ENST00000582352 DCAF5Q96JK2 942 aa14.17□□□□□ -0.14
SHMT1-208ENST00000582352 KLF18A0A0U1RQI7 1052 aa14.17□□□□□ -0.14
SHMT1-208ENST00000582352 KCNJ6P48051 423 aa14.17□□□□□ -0.14
SHMT1-208ENST00000582352 NLRP12P59046 1061 aa14.17□□□□□ -0.14
SHMT1-208ENST00000582352 KRT28Q7Z3Y7 464 aa14.17□□□□□ -0.14
SHMT1-208ENST00000582352 FBXO18Q8NFZ0 1043 aa14.17□□□□□ -0.14
SHMT1-208ENST00000582352 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.17□□□□□ -0.14
SHMT1-208ENST00000582352 ORC3Q9UBD5 711 aaPredicted RBP14.17□□□□□ -0.14
SHMT1-208ENST00000582352 NEDD4P46934 1319 aa14.16□□□□□ -0.14
SHMT1-208ENST00000582352 A0A1B0GUL7 405 aa14.16□□□□□ -0.14
SHMT1-208ENST00000582352 ZNF202O95125 648 aa14.16□□□□□ -0.14
SHMT1-208ENST00000582352 HAND2P61296 217 aa14.16□□□□□ -0.14
SHMT1-208ENST00000582352 GPHNQ9NQX3 736 aaPredicted RBP14.16□□□□□ -0.14
SHMT1-208ENST00000582352 CWC25Q9NXE8 425 aaPredicted RBP14.16□□□□□ -0.14
SHMT1-208ENST00000582352 H7C1W4 665 aa14.16□□□□□ -0.14
SHMT1-208ENST00000582352 PRC1O43663 620 aa14.16□□□□□ -0.14
SHMT1-208ENST00000582352 SYT10Q6XYQ8 523 aa14.16□□□□□ -0.14
SHMT1-208ENST00000582352 L2HGDHQ9H9P8 463 aa14.16□□□□□ -0.14
SHMT1-208ENST00000582352 EYA2O00167 538 aa14.15□□□□□ -0.14
SHMT1-208ENST00000582352 NPHP1O15259 732 aa14.15□□□□□ -0.14
SHMT1-208ENST00000582352 CSB-PGBD3P0DP91 1061 aa14.15□□□□□ -0.14
SHMT1-208ENST00000582352 FKBP4Q02790 459 aaKnown RBP eCLIP14.15□□□□□ -0.14
SHMT1-208ENST00000582352 WASHC4Q2M389 1173 aa14.15□□□□□ -0.14
SHMT1-208ENST00000582352 RALYLQ86SE5 291 aaKnown RBP14.15□□□□□ -0.14
SHMT1-208ENST00000582352 OSBP2Q969R2 916 aa14.15□□□□□ -0.14
SHMT1-208ENST00000582352 CCP110O43303 1012 aa14.15□□□□□ -0.14
SHMT1-208ENST00000582352 TUBB4AP04350 444 aa14.15□□□□□ -0.14
SHMT1-208ENST00000582352 PFKFB1P16118 471 aa14.15□□□□□ -0.14
SHMT1-208ENST00000582352 CABP4P57796 275 aa14.15□□□□□ -0.14
SHMT1-208ENST00000582352 LRRC24Q50LG9 513 aa14.15□□□□□ -0.14
SHMT1-208ENST00000582352 TAF3Q5VWG9 929 aa14.15□□□□□ -0.14
SHMT1-208ENST00000582352 ANO1Q5XXA6 986 aa14.15□□□□□ -0.14
SHMT1-208ENST00000582352 HOMER1Q86YM7 354 aa14.15□□□□□ -0.14
SHMT1-208ENST00000582352 SLFN14P0C7P3 912 aa14.14□□□□□ -0.15
SHMT1-208ENST00000582352 LMOD1P29536 600 aaPredicted RBP14.14□□□□□ -0.15
SHMT1-208ENST00000582352 GORABQ5T7V8 394 aa14.14□□□□□ -0.15
SHMT1-208ENST00000582352 TERF2Q15554 542 aa14.14□□□□□ -0.15
SHMT1-208ENST00000582352 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.14□□□□□ -0.15
SHMT1-208ENST00000582352 ZNF594Q96JF6 807 aaPredicted RBP14.14□□□□□ -0.15
SHMT1-208ENST00000582352 MROH7-TTC4A0A0A0MT08 1334 aa14.13□□□□□ -0.15
SHMT1-208ENST00000582352 NWD2Q9ULI1 1742 aa14.13□□□□□ -0.15
SHMT1-208ENST00000582352 IKBKBO14920 756 aa14.13□□□□□ -0.15
SHMT1-208ENST00000582352 CMA1P23946 247 aa14.13□□□□□ -0.15
SHMT1-208ENST00000582352 FANCCQ00597 558 aa14.13□□□□□ -0.15
SHMT1-208ENST00000582352 ERCC6LQ2NKX8 1250 aa14.13□□□□□ -0.15
SHMT1-208ENST00000582352 RAB11FIP4Q86YS3 637 aa14.13□□□□□ -0.15
SHMT1-208ENST00000582352 TJP1Q07157 1748 aa14.13□□□□□ -0.15
SHMT1-208ENST00000582352 CIAO1O76071 339 aa14.13□□□□□ -0.15
SHMT1-208ENST00000582352 ZFYP08048 801 aaPredicted RBP14.13□□□□□ -0.15
SHMT1-208ENST00000582352 KIF23Q02241 960 aaPredicted RBP14.13□□□□□ -0.15
SHMT1-208ENST00000582352 NCAPHQ15003 741 aa14.13□□□□□ -0.15
SHMT1-208ENST00000582352 CCDC158Q5M9N0 1113 aa14.13□□□□□ -0.15
SHMT1-208ENST00000582352 TTC39AQ5SRH9 613 aa14.13□□□□□ -0.15
SHMT1-208ENST00000582352 NCOA7Q8NI08 942 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms