RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ZCCHC17Q9NP64 241 aaKnown RBP21.52■■□□□ 1.04
VPS53-218ENST00000575207 ZMYND8Q9ULU4 1186 aaPredicted RBP21.52■■□□□ 1.04
VPS53-218ENST00000575207 UNC93B1Q9H1C4 597 aa21.51■■□□□ 1.03
VPS53-218ENST00000575207 ELP3Q9H9T3 547 aa21.51■■□□□ 1.03
VPS53-218ENST00000575207 OSBPP22059 807 aa21.5■■□□□ 1.03
VPS53-218ENST00000575207 BIN2Q9UBW5 565 aaPredicted RBP21.5■■□□□ 1.03
VPS53-218ENST00000575207 PIEZO1Q92508 2521 aa21.49■■□□□ 1.03
VPS53-218ENST00000575207 PSMC4P43686 418 aa21.49■■□□□ 1.03
VPS53-218ENST00000575207 NBPF12Q5TAG4 269 aaPredicted RBP21.49■■□□□ 1.03
VPS53-218ENST00000575207 C7orf61Q8IZ16 206 aa21.49■■□□□ 1.03
VPS53-218ENST00000575207 MAFAQ8NHW3 353 aaPredicted RBP21.49■■□□□ 1.03
VPS53-218ENST00000575207 PAWRQ96IZ0 340 aaKnown RBP21.49■■□□□ 1.03
VPS53-218ENST00000575207 UBE2OQ9C0C9 1292 aaKnown RBP21.49■■□□□ 1.03
VPS53-218ENST00000575207 ZNF804BA4D1E1 1349 aa21.49■■□□□ 1.03
VPS53-218ENST00000575207 CDH23Q9H251 3354 aa21.48■■□□□ 1.03
VPS53-218ENST00000575207 PROSER3Q2NL68 480 aa21.48■■□□□ 1.03
VPS53-218ENST00000575207 C17orf99Q6UX52 265 aa21.48■■□□□ 1.03
VPS53-218ENST00000575207 FAM89AQ96GI7 184 aa21.48■■□□□ 1.03
VPS53-218ENST00000575207 XDHP47989 1333 aa21.48■■□□□ 1.03
VPS53-218ENST00000575207 TFRCP02786 760 aaKnown RBP21.47■■□□□ 1.03
VPS53-218ENST00000575207 ATP2B4P23634 1241 aa21.47■■□□□ 1.03
VPS53-218ENST00000575207 NECAB2Q7Z6G3 386 aa21.47■■□□□ 1.03
VPS53-218ENST00000575207 FAM161BQ96MY7 647 aa21.47■■□□□ 1.03
VPS53-218ENST00000575207 MYPNQ86TC9 1320 aa21.47■■□□□ 1.03
VPS53-218ENST00000575207 COPS6Q7L5N1 327 aa21.46■■□□□ 1.03
VPS53-218ENST00000575207 SLAIN1Q8ND83 568 aa21.46■■□□□ 1.03
VPS53-218ENST00000575207 CNKSR2Q8WXI2 1034 aa21.46■■□□□ 1.03
VPS53-218ENST00000575207 CRISPLD2Q9H0B8 497 aa21.46■■□□□ 1.03
VPS53-218ENST00000575207 FAM205AQ6ZU69 1335 aa21.46■■□□□ 1.03
VPS53-218ENST00000575207 SYNGAP1Q96PV0 1343 aa21.46■■□□□ 1.03
VPS53-218ENST00000575207 COL2A1P02458 1487 aaPredicted RBP21.45■■□□□ 1.03
VPS53-218ENST00000575207 KIAA0825Q8IV33 1275 aa21.45■■□□□ 1.02
VPS53-218ENST00000575207 SEC31BQ9NQW1 1179 aa21.45■■□□□ 1.02
VPS53-218ENST00000575207 NCOR1O75376 2440 aa21.45■■□□□ 1.02
VPS53-218ENST00000575207 TMEM265A0A087WTH1 108 aa21.44■■□□□ 1.02
VPS53-218ENST00000575207 ECM2O94769 699 aaPredicted RBP21.44■■□□□ 1.02
VPS53-218ENST00000575207 ANXA1P04083 346 aa21.44■■□□□ 1.02
VPS53-218ENST00000575207 SYN1P17600 705 aa21.44■■□□□ 1.02
VPS53-218ENST00000575207 MAP3K12Q12852 859 aa21.44■■□□□ 1.02
VPS53-218ENST00000575207 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.44■■□□□ 1.02
VPS53-218ENST00000575207 MTMR14Q8NCE2 650 aa21.44■■□□□ 1.02
VPS53-218ENST00000575207 ZNF428Q96B54 188 aa21.44■■□□□ 1.02
VPS53-218ENST00000575207 CDX2Q99626 313 aaPredicted RBP21.44■■□□□ 1.02
VPS53-218ENST00000575207 OTOFQ9HC10 1997 aa21.44■■□□□ 1.02
VPS53-218ENST00000575207 MED23Q9ULK4 1368 aa21.44■■□□□ 1.02
VPS53-218ENST00000575207 BTBD19C9JJ37 291 aa21.43■■□□□ 1.02
VPS53-218ENST00000575207 FMNL1O95466 1100 aaPredicted RBP21.43■■□□□ 1.02
VPS53-218ENST00000575207 DLGAP5Q15398 846 aa21.43■■□□□ 1.02
VPS53-218ENST00000575207 DEFB118Q96PH6 123 aa21.43■■□□□ 1.02
VPS53-218ENST00000575207 TJAP1Q5JTD0 557 aa21.42■■□□□ 1.02
VPS53-218ENST00000575207 XAGE3Q8WTP9 111 aa21.42■■□□□ 1.02
VPS53-218ENST00000575207 FBXW7Q969H0 707 aa21.42■■□□□ 1.02
VPS53-218ENST00000575207 PAK6Q9NQU5 681 aaPredicted RBP21.42■■□□□ 1.02
VPS53-218ENST00000575207 ADGRA2Q96PE1 1338 aa21.41■■□□□ 1.02
VPS53-218ENST00000575207 CETPP11597 493 aa21.41■■□□□ 1.02
VPS53-218ENST00000575207 AIMP1Q12904 312 aaKnown RBP21.41■■□□□ 1.02
VPS53-218ENST00000575207 ZNF697Q5TEC3 545 aa21.41■■□□□ 1.02
VPS53-218ENST00000575207 DIS3LQ8TF46 1054 aaKnown RBP21.41■■□□□ 1.02
VPS53-218ENST00000575207 ISCA1Q9BUE6 129 aa21.41■■□□□ 1.02
VPS53-218ENST00000575207 COA1Q9GZY4 146 aa21.41■■□□□ 1.02
VPS53-218ENST00000575207 IRS4O14654 1257 aaPredicted RBP21.4■■□□□ 1.02
VPS53-218ENST00000575207 PRKCZQ05513 592 aa21.4■■□□□ 1.02
VPS53-218ENST00000575207 TTLL5Q6EMB2 1281 aa21.4■■□□□ 1.02
VPS53-218ENST00000575207 ARIH1Q9Y4X5 557 aaPredicted RBP21.4■■□□□ 1.02
VPS53-218ENST00000575207 EIF2S2P20042 333 aaKnown RBP21.39■■□□□ 1.01
VPS53-218ENST00000575207 VGLL4Q14135 290 aa21.39■■□□□ 1.01
VPS53-218ENST00000575207 RASA3Q14644 834 aa21.39■■□□□ 1.01
VPS53-218ENST00000575207 CPA4Q9UI42 421 aa21.39■■□□□ 1.01
VPS53-218ENST00000575207 ANKLE1Q8NAG6 615 aa21.38■■□□□ 1.01
VPS53-218ENST00000575207 BDP1A6H8Y1 2624 aa21.37■■□□□ 1.01
VPS53-218ENST00000575207 ECM29Q5VYK3 1845 aa21.37■■□□□ 1.01
VPS53-218ENST00000575207 MYO1BO43795 1136 aa21.37■■□□□ 1.01
VPS53-218ENST00000575207 MAP3K9P80192 1104 aa21.37■■□□□ 1.01
VPS53-218ENST00000575207 SNX27Q96L92 541 aa21.37■■□□□ 1.01
VPS53-218ENST00000575207 CLRN2A0PK11 232 aa21.36■■□□□ 1.01
VPS53-218ENST00000575207 SPDYE5A6NIY4 337 aa21.36■■□□□ 1.01
VPS53-218ENST00000575207 INHAP05111 366 aa21.36■■□□□ 1.01
VPS53-218ENST00000575207 RTL5Q5HYW3 569 aaPredicted RBP21.36■■□□□ 1.01
VPS53-218ENST00000575207 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.36■■□□□ 1.01
VPS53-218ENST00000575207 PCDHAC2Q9Y5I4 1007 aa21.36■■□□□ 1.01
VPS53-218ENST00000575207 SPDYE2BA6NHP3 402 aa21.35■■□□□ 1.01
VPS53-218ENST00000575207 ADCY3O60266 1144 aa21.35■■□□□ 1.01
VPS53-218ENST00000575207 SPDYE6P0CI01 402 aa21.35■■□□□ 1.01
VPS53-218ENST00000575207 CC2D1BQ5T0F9 858 aaKnown RBP21.35■■□□□ 1.01
VPS53-218ENST00000575207 PXYLP1Q8TE99 480 aa21.35■■□□□ 1.01
VPS53-218ENST00000575207 SEMA6BQ9H3T3 888 aa21.35■■□□□ 1.01
VPS53-218ENST00000575207 VEZTQ9HBM0 779 aa21.35■■□□□ 1.01
VPS53-218ENST00000575207 SNAPC2Q13487 334 aa21.34■■□□□ 1.01
VPS53-218ENST00000575207 PRMT6Q96LA8 375 aaPredicted RBP21.34■■□□□ 1.01
VPS53-218ENST00000575207 NBPF3Q9H094 633 aa21.34■■□□□ 1.01
VPS53-218ENST00000575207 GABRQQ9UN88 632 aa21.34■■□□□ 1.01
VPS53-218ENST00000575207 CSADQ9Y600 493 aa21.34■■□□□ 1.01
VPS53-218ENST00000575207 PER1O15534 1290 aaPredicted RBP21.33■■□□□ 1.01
VPS53-218ENST00000575207 FCGRTP55899 365 aa21.33■■□□□ 1.01
VPS53-218ENST00000575207 TRIM28Q13263 835 aaKnown RBP21.33■■□□□ 1.01
VPS53-218ENST00000575207 TXNRD3Q86VQ6 643 aa21.33■■□□□ 1.01
VPS53-218ENST00000575207 ATP5J2-PTCD1G3V325 749 aa21.32■■□□□ 1
VPS53-218ENST00000575207 GTF2IP78347 998 aa21.32■■□□□ 1
VPS53-218ENST00000575207 CCDC152Q4G0S7 254 aa21.32■■□□□ 1
VPS53-218ENST00000575207 ANKRD18AQ8IVF6 992 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms