RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 ASAP1Q9ULH1 1129 aa12.53□□□□□ -0.4
CIITA-208ENST00000572665 WASF2Q9Y6W5 498 aa12.53□□□□□ -0.4
CIITA-208ENST00000572665 LILRA1O75019 489 aa12.52□□□□□ -0.41
CIITA-208ENST00000572665 CABP4P57796 275 aa12.52□□□□□ -0.41
CIITA-208ENST00000572665 NNTQ13423 1086 aa12.52□□□□□ -0.41
CIITA-208ENST00000572665 ZNF530Q6P9A1 599 aaPredicted RBP12.52□□□□□ -0.41
CIITA-208ENST00000572665 LINC00116Q8NCU8 138 aa12.52□□□□□ -0.41
CIITA-208ENST00000572665 TPCN2Q8NHX9 752 aa12.52□□□□□ -0.41
CIITA-208ENST00000572665 RTCBQ9Y3I0 505 aaKnown RBP12.52□□□□□ -0.41
CIITA-208ENST00000572665 TNFRSF10AO00220 468 aa12.51□□□□□ -0.41
CIITA-208ENST00000572665 MTHFSP49914 203 aa12.51□□□□□ -0.41
CIITA-208ENST00000572665 C1QTNF8P60827 252 aa12.51□□□□□ -0.41
CIITA-208ENST00000572665 TRAPPC3LQ5T215 181 aa12.51□□□□□ -0.41
CIITA-208ENST00000572665 ATG3Q9NT62 314 aa12.51□□□□□ -0.41
CIITA-208ENST00000572665 PGPEP1Q9NXJ5 209 aa12.51□□□□□ -0.41
CIITA-208ENST00000572665 TRIM67Q6ZTA4 783 aa12.5□□□□□ -0.41
CIITA-208ENST00000572665 CYP4X1Q8N118 509 aa12.5□□□□□ -0.41
CIITA-208ENST00000572665 NLGN1Q8N2Q7 840 aa12.5□□□□□ -0.41
CIITA-208ENST00000572665 KCTD17Q8N5Z5 321 aa12.5□□□□□ -0.41
CIITA-208ENST00000572665 TOR4AQ9NXH8 423 aa12.5□□□□□ -0.41
CIITA-208ENST00000572665 TTC24A2A3L6 582 aaPredicted RBP12.49□□□□□ -0.41
CIITA-208ENST00000572665 J3QL48 77 aa12.49□□□□□ -0.41
CIITA-208ENST00000572665 YBX3P16989 372 aaKnown RBP eCLIP12.49□□□□□ -0.41
CIITA-208ENST00000572665 PRR20EP86478 221 aa12.49□□□□□ -0.41
CIITA-208ENST00000572665 PRR20CP86479 221 aa12.49□□□□□ -0.41
CIITA-208ENST00000572665 PRR20DP86480 221 aa12.49□□□□□ -0.41
CIITA-208ENST00000572665 PRR20BP86481 221 aa12.49□□□□□ -0.41
CIITA-208ENST00000572665 PRR20AP86496 221 aa12.49□□□□□ -0.41
CIITA-208ENST00000572665 ITPK1Q13572 414 aa12.49□□□□□ -0.41
CIITA-208ENST00000572665 COL5A3P25940 1745 aaPredicted RBP12.48□□□□□ -0.41
CIITA-208ENST00000572665 KDRP35968 1356 aa12.48□□□□□ -0.41
CIITA-208ENST00000572665 CNTNAP4Q9C0A0 1308 aa12.48□□□□□ -0.41
CIITA-208ENST00000572665 RFC4P35249 363 aa12.48□□□□□ -0.41
CIITA-208ENST00000572665 SEC13P55735 322 aa12.48□□□□□ -0.41
CIITA-208ENST00000572665 SULT6B1Q6IMI4 303 aa12.48□□□□□ -0.41
CIITA-208ENST00000572665 RBM19Q9Y4C8 960 aaKnown RBP12.48□□□□□ -0.41
CIITA-208ENST00000572665 SENP3-EIF4A1A0A087X0R7 540 aa12.47□□□□□ -0.41
CIITA-208ENST00000572665 SFI1A8K8P3 1242 aa12.47□□□□□ -0.41
CIITA-208ENST00000572665 BRD1O95696 1058 aa12.47□□□□□ -0.41
CIITA-208ENST00000572665 SCN11AQ9UI33 1791 aa12.47□□□□□ -0.41
CIITA-208ENST00000572665 RPS6KA4O75676 772 aa12.46□□□□□ -0.41
CIITA-208ENST00000572665 MMP10P09238 476 aa12.46□□□□□ -0.41
CIITA-208ENST00000572665 SMPD1P17405 629 aa12.46□□□□□ -0.41
CIITA-208ENST00000572665 ADD1P35611 737 aaKnown RBP12.46□□□□□ -0.41
CIITA-208ENST00000572665 TGFB2P61812 414 aa12.46□□□□□ -0.41
CIITA-208ENST00000572665 SWI5Q1ZZU3 235 aa12.46□□□□□ -0.41
CIITA-208ENST00000572665 AKAP4Q5JQC9 854 aa12.46□□□□□ -0.41
CIITA-208ENST00000572665 CYP2U1Q7Z449 544 aa12.46□□□□□ -0.41
CIITA-208ENST00000572665 CLP1Q92989 425 aaKnown RBP12.46□□□□□ -0.41
CIITA-208ENST00000572665 CCDC87Q9NVE4 849 aa12.46□□□□□ -0.41
CIITA-208ENST00000572665 KIF13BQ9NQT8 1826 aa12.46□□□□□ -0.42
CIITA-208ENST00000572665 KDM6AO15550 1401 aaPredicted RBP12.45□□□□□ -0.42
CIITA-208ENST00000572665 RGS20O76081 388 aa12.45□□□□□ -0.42
CIITA-208ENST00000572665 IL13P35225 146 aa12.45□□□□□ -0.42
CIITA-208ENST00000572665 AMIGO3Q86WK7 504 aa12.45□□□□□ -0.42
CIITA-208ENST00000572665 AEBP1Q8IUX7 1158 aa12.45□□□□□ -0.42
CIITA-208ENST00000572665 KLF16Q9BXK1 252 aaPredicted RBP12.45□□□□□ -0.42
CIITA-208ENST00000572665 PARP3Q9Y6F1 533 aa12.45□□□□□ -0.42
CIITA-208ENST00000572665 UTRNP46939 3433 aa12.44□□□□□ -0.42
CIITA-208ENST00000572665 TMEM229AB2RXF0 380 aa12.44□□□□□ -0.42
CIITA-208ENST00000572665 SCNN1DP51172 638 aa12.44□□□□□ -0.42
CIITA-208ENST00000572665 CICQ96RK0 1608 aaPredicted RBP12.44□□□□□ -0.42
CIITA-208ENST00000572665 VIRMAQ69YN4 1812 aaKnown RBP12.44□□□□□ -0.42
CIITA-208ENST00000572665 KIF7Q2M1P5 1343 aa12.43□□□□□ -0.42
CIITA-208ENST00000572665 PTCD1O75127 700 aaKnown RBP12.43□□□□□ -0.42
CIITA-208ENST00000572665 GDF10P55107 478 aa12.43□□□□□ -0.42
CIITA-208ENST00000572665 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.43□□□□□ -0.42
CIITA-208ENST00000572665 ITPKCQ96DU7 683 aa12.43□□□□□ -0.42
CIITA-208ENST00000572665 ZNF358Q9NW07 568 aa12.43□□□□□ -0.42
CIITA-208ENST00000572665 ATP10DQ9P241 1426 aa12.43□□□□□ -0.42
CIITA-208ENST00000572665 C4AP0C0L4 1744 aa12.42□□□□□ -0.42
CIITA-208ENST00000572665 M0R2N6 131 aa12.42□□□□□ -0.42
CIITA-208ENST00000572665 DIAPH1O60610 1272 aaKnown RBP12.42□□□□□ -0.42
CIITA-208ENST00000572665 ZIC2O95409 532 aaPredicted RBP12.42□□□□□ -0.42
CIITA-208ENST00000572665 STAU1O95793 577 aaKnown RBP12.42□□□□□ -0.42
CIITA-208ENST00000572665 GNRH1P01148 92 aa12.42□□□□□ -0.42
CIITA-208ENST00000572665 SMIM5Q71RC9 77 aa12.42□□□□□ -0.42
CIITA-208ENST00000572665 MYH14Q7Z406 1995 aaKnown RBP12.41□□□□□ -0.42
CIITA-208ENST00000572665 ADH1AP07327 375 aa12.41□□□□□ -0.42
CIITA-208ENST00000572665 GYS1P13807 737 aa12.41□□□□□ -0.42
CIITA-208ENST00000572665 TIMP2P16035 220 aa12.41□□□□□ -0.42
CIITA-208ENST00000572665 CRKLP46109 303 aaKnown RBP12.41□□□□□ -0.42
CIITA-208ENST00000572665 WDR4P57081 412 aaKnown RBP12.41□□□□□ -0.42
CIITA-208ENST00000572665 CBLBQ13191 982 aa12.41□□□□□ -0.42
CIITA-208ENST00000572665 B4GALNT3Q6L9W6 998 aa12.41□□□□□ -0.42
CIITA-208ENST00000572665 SLC4A9Q96Q91 983 aa12.41□□□□□ -0.42
CIITA-208ENST00000572665 ZFAND3Q9H8U3 227 aa12.41□□□□□ -0.42
CIITA-208ENST00000572665 SLC52A2Q9HAB3 445 aa12.41□□□□□ -0.42
CIITA-208ENST00000572665 ETNK1Q9HBU6 452 aa12.41□□□□□ -0.42
CIITA-208ENST00000572665 N4BP2Q86UW6 1770 aaPredicted RBP12.41□□□□□ -0.42
CIITA-208ENST00000572665 C10orf71Q711Q0 1435 aa12.4□□□□□ -0.42
CIITA-208ENST00000572665 KCNA1Q09470 495 aa12.4□□□□□ -0.42
CIITA-208ENST00000572665 Q6ZVU0 165 aa12.4□□□□□ -0.42
CIITA-208ENST00000572665 ADCY9O60503 1353 aa12.4□□□□□ -0.42
CIITA-208ENST00000572665 NPC1L1Q9UHC9 1359 aa12.4□□□□□ -0.42
CIITA-208ENST00000572665 PXDNLA1KZ92 1463 aa12.4□□□□□ -0.43
CIITA-208ENST00000572665 TJP1Q07157 1748 aa12.4□□□□□ -0.43
CIITA-208ENST00000572665 INHAP05111 366 aa12.39□□□□□ -0.43
CIITA-208ENST00000572665 HMOX1P09601 288 aa12.39□□□□□ -0.43
CIITA-208ENST00000572665 CC2D1BQ5T0F9 858 aaKnown RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms