RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 RASAL3Q86YV0 1011 aa22.88■■□□□ 1.25
CHD3-214ENST00000572579 ABHD8Q96I13 439 aa22.88■■□□□ 1.25
CHD3-214ENST00000572579 FAM84BQ96KN1 310 aaPredicted RBP22.88■■□□□ 1.25
CHD3-214ENST00000572579 PTPRCP08575 1304 aa22.87■■□□□ 1.25
CHD3-214ENST00000572579 GYG1P46976 350 aa22.87■■□□□ 1.25
CHD3-214ENST00000572579 FKBP1BP68106 108 aa22.87■■□□□ 1.25
CHD3-214ENST00000572579 KLHDC4Q8TBB5 520 aa22.87■■□□□ 1.25
CHD3-214ENST00000572579 F8W031 263 aaPredicted RBP22.86■■□□□ 1.25
CHD3-214ENST00000572579 MMP14P50281 582 aa22.86■■□□□ 1.25
CHD3-214ENST00000572579 ZNF804AQ7Z570 1209 aa22.86■■□□□ 1.25
CHD3-214ENST00000572579 MTMR14Q8NCE2 650 aa22.86■■□□□ 1.25
CHD3-214ENST00000572579 TDRD7Q8NHU6 1098 aaKnown RBP22.86■■□□□ 1.25
CHD3-214ENST00000572579 PRMT6Q96LA8 375 aaPredicted RBP22.86■■□□□ 1.25
CHD3-214ENST00000572579 RNF186Q9NXI6 227 aa22.86■■□□□ 1.25
CHD3-214ENST00000572579 UBE4AQ14139 1066 aa22.85■■□□□ 1.25
CHD3-214ENST00000572579 FZD1Q9UP38 647 aa22.85■■□□□ 1.25
CHD3-214ENST00000572579 FKBP1AP62942 108 aaKnown RBP22.84■■□□□ 1.25
CHD3-214ENST00000572579 GRIK5Q16478 980 aa22.84■■□□□ 1.25
CHD3-214ENST00000572579 VGLL2Q8N8G2 317 aa22.84■■□□□ 1.25
CHD3-214ENST00000572579 HDAC9Q9UKV0 1011 aa22.84■■□□□ 1.25
CHD3-214ENST00000572579 FAM205AQ6ZU69 1335 aa22.83■■□□□ 1.25
CHD3-214ENST00000572579 ALDH1L2Q3SY69 923 aa22.83■■□□□ 1.25
CHD3-214ENST00000572579 CFAP100Q494V2 611 aa22.83■■□□□ 1.25
CHD3-214ENST00000572579 FBXO33Q7Z6M2 555 aa22.83■■□□□ 1.25
CHD3-214ENST00000572579 A0A1B0GUL6 1792 aa22.82■■□□□ 1.24
CHD3-214ENST00000572579 SPDYE2BA6NHP3 402 aa22.82■■□□□ 1.24
CHD3-214ENST00000572579 TRPA1O75762 1119 aa22.82■■□□□ 1.24
CHD3-214ENST00000572579 SPDYE6P0CI01 402 aa22.82■■□□□ 1.24
CHD3-214ENST00000572579 HIBADHP31937 336 aaKnown RBP22.82■■□□□ 1.24
CHD3-214ENST00000572579 RFX5P48382 616 aaPredicted RBP22.82■■□□□ 1.24
CHD3-214ENST00000572579 DLGAP5Q15398 846 aa22.82■■□□□ 1.24
CHD3-214ENST00000572579 DEFB129Q9H1M3 183 aa22.82■■□□□ 1.24
CHD3-214ENST00000572579 CCER2I3L3R5 266 aa22.81■■□□□ 1.24
CHD3-214ENST00000572579 PTPN12Q05209 780 aaKnown RBP22.81■■□□□ 1.24
CHD3-214ENST00000572579 CLRN2A0PK11 232 aa22.8■■□□□ 1.24
CHD3-214ENST00000572579 PRKG1Q13976 671 aa22.8■■□□□ 1.24
CHD3-214ENST00000572579 LDLRAD1Q5T700 205 aa22.8■■□□□ 1.24
CHD3-214ENST00000572579 APOBEC3FQ8IUX4 373 aaKnown RBP22.8■■□□□ 1.24
CHD3-214ENST00000572579 SMC4Q9NTJ3 1288 aa22.8■■□□□ 1.24
CHD3-214ENST00000572579 SAGE1Q9NXZ1 904 aa22.8■■□□□ 1.24
CHD3-214ENST00000572579 NOB1Q9ULX3 412 aaKnown RBP22.8■■□□□ 1.24
CHD3-214ENST00000572579 PAPPA2Q9BXP8 1791 aa22.8■■□□□ 1.24
CHD3-214ENST00000572579 MROH5Q6ZUA9 1318 aa22.8■■□□□ 1.24
CHD3-214ENST00000572579 MCOLN1Q9GZU1 580 aa22.79■■□□□ 1.24
CHD3-214ENST00000572579 IQSEC3Q9UPP2 1182 aaPredicted RBP22.79■■□□□ 1.24
CHD3-214ENST00000572579 PDE8BO95263 885 aa22.78■■□□□ 1.24
CHD3-214ENST00000572579 TTLL12Q14166 644 aaPredicted RBP22.78■■□□□ 1.24
CHD3-214ENST00000572579 MFSD14BQ5SR56 506 aa22.78■■□□□ 1.24
CHD3-214ENST00000572579 SSC5DA1L4H1 1573 aa22.77■■□□□ 1.24
CHD3-214ENST00000572579 FGFR2P21802 821 aa22.77■■□□□ 1.24
CHD3-214ENST00000572579 BCAMP50895 628 aa22.77■■□□□ 1.24
CHD3-214ENST00000572579 METTL24Q5JXM2 366 aa22.77■■□□□ 1.24
CHD3-214ENST00000572579 CASP8AP2Q9UKL3 1982 aa22.77■■□□□ 1.24
CHD3-214ENST00000572579 MKRN3Q13064 507 aaKnown RBP22.76■■□□□ 1.23
CHD3-214ENST00000572579 NBPF12Q5TAG4 269 aaPredicted RBP22.75■■□□□ 1.23
CHD3-214ENST00000572579 ATG9AQ7Z3C6 839 aa22.75■■□□□ 1.23
CHD3-214ENST00000572579 ANGEL1Q9UNK9 670 aaKnown RBP22.75■■□□□ 1.23
CHD3-214ENST00000572579 TTF2Q9UNY4 1162 aaKnown RBP22.75■■□□□ 1.23
CHD3-214ENST00000572579 NF2P35240 595 aa22.74■■□□□ 1.23
CHD3-214ENST00000572579 TM4SF4P48230 202 aa22.74■■□□□ 1.23
CHD3-214ENST00000572579 RARSP54136 660 aaKnown RBP22.74■■□□□ 1.23
CHD3-214ENST00000572579 MAP3K11Q16584 847 aa22.74■■□□□ 1.23
CHD3-214ENST00000572579 CDAN1Q8IWY9 1227 aa22.74■■□□□ 1.23
CHD3-214ENST00000572579 EYA2O00167 538 aa22.73■■□□□ 1.23
CHD3-214ENST00000572579 CT47B1P0C2W7 299 aaPredicted RBP22.73■■□□□ 1.23
CHD3-214ENST00000572579 RBM5P52756 815 aaKnown RBP eCLIP22.73■■□□□ 1.23
CHD3-214ENST00000572579 DGKZQ13574 1117 aa22.73■■□□□ 1.23
CHD3-214ENST00000572579 RASA3Q14644 834 aa22.73■■□□□ 1.23
CHD3-214ENST00000572579 ARMC9Q7Z3E5 817 aa22.73■■□□□ 1.23
CHD3-214ENST00000572579 CLMNQ96JQ2 1002 aa22.73■■□□□ 1.23
CHD3-214ENST00000572579 R3HDMLQ9H3Y0 253 aa22.73■■□□□ 1.23
CHD3-214ENST00000572579 TDRD3Q9H7E2 651 aaKnown RBP22.73■■□□□ 1.23
CHD3-214ENST00000572579 VEZTQ9HBM0 779 aa22.73■■□□□ 1.23
CHD3-214ENST00000572579 ZNF70Q9UC06 446 aaPredicted RBP22.73■■□□□ 1.23
CHD3-214ENST00000572579 SERPINA10Q9UK55 444 aa22.73■■□□□ 1.23
CHD3-214ENST00000572579 CCDC85CA6NKD9 419 aa22.72■■□□□ 1.23
CHD3-214ENST00000572579 CHAF1AQ13111 956 aaPredicted RBP22.72■■□□□ 1.23
CHD3-214ENST00000572579 SPDYE2Q495Y8 402 aa22.72■■□□□ 1.23
CHD3-214ENST00000572579 SPRYD7Q5W111 196 aa22.72■■□□□ 1.23
CHD3-214ENST00000572579 REM2Q8IYK8 340 aaPredicted RBP22.72■■□□□ 1.23
CHD3-214ENST00000572579 DZIP1LQ8IYY4 767 aaKnown RBP22.72■■□□□ 1.23
CHD3-214ENST00000572579 USP2O75604 605 aaPredicted RBP22.71■■□□□ 1.23
CHD3-214ENST00000572579 TBC1D8O95759 1140 aa22.71■■□□□ 1.23
CHD3-214ENST00000572579 TEPSINQ96N21 525 aa22.71■■□□□ 1.23
CHD3-214ENST00000572579 PPP2R3BQ9Y5P8 575 aa22.71■■□□□ 1.23
CHD3-214ENST00000572579 CRKP46108 304 aa22.7■■□□□ 1.22
CHD3-214ENST00000572579 COL1A1P02452 1464 aaPredicted RBP22.69■■□□□ 1.22
CHD3-214ENST00000572579 MYO1BO43795 1136 aa22.69■■□□□ 1.22
CHD3-214ENST00000572579 GJA5P36382 358 aa22.69■■□□□ 1.22
CHD3-214ENST00000572579 PUM3Q15397 648 aaKnown RBP22.69■■□□□ 1.22
CHD3-214ENST00000572579 VPS37DQ86XT2 251 aa22.69■■□□□ 1.22
CHD3-214ENST00000572579 MEIS3Q99687 375 aa22.69■■□□□ 1.22
CHD3-214ENST00000572579 TNNQ9UQP3 1299 aa22.69■■□□□ 1.22
CHD3-214ENST00000572579 LRRFIP2Q9Y608 721 aaKnown RBP22.69■■□□□ 1.22
CHD3-214ENST00000572579 CAVIN4Q5BKX8 364 aa22.68■■□□□ 1.22
CHD3-214ENST00000572579 API5Q9BZZ5 524 aaKnown RBP22.68■■□□□ 1.22
CHD3-214ENST00000572579 PA2G4Q9UQ80 394 aaKnown RBP22.68■■□□□ 1.22
CHD3-214ENST00000572579 UBTFL1P0CB47 393 aaPredicted RBP22.67■■□□□ 1.22
CHD3-214ENST00000572579 SUPT20HL1Q3ZLR7 823 aa22.67■■□□□ 1.22
CHD3-214ENST00000572579 SLC10A4Q96EP9 437 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms