RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 GNRH1P01148 92 aa9.35□□□□□ -0.91
CHD3-213ENST00000571249 DDX46Q7L014 1031 aaKnown RBP9.35□□□□□ -0.91
CHD3-213ENST00000571249 PKD1L2Q7Z442 2459 aa9.35□□□□□ -0.91
CHD3-213ENST00000571249 PODNQ7Z5L7 613 aa9.35□□□□□ -0.91
CHD3-213ENST00000571249 ASB2Q96Q27 587 aa9.35□□□□□ -0.91
CHD3-213ENST00000571249 ZBTB3Q9H5J0 574 aa9.35□□□□□ -0.91
CHD3-213ENST00000571249 SPTBN4Q9H254 2564 aa9.35□□□□□ -0.91
CHD3-213ENST00000571249 CCL15-CCL14A0A0B4J2E2 113 aa9.34□□□□□ -0.91
CHD3-213ENST00000571249 BTBD11A6QL63 1104 aa9.34□□□□□ -0.91
CHD3-213ENST00000571249 ERVV-1B6SEH8 477 aa9.34□□□□□ -0.91
CHD3-213ENST00000571249 SNRPA1P09661 255 aaKnown RBP9.34□□□□□ -0.91
CHD3-213ENST00000571249 CCL15Q16663 113 aa9.34□□□□□ -0.91
CHD3-213ENST00000571249 TBC1D16Q8TBP0 767 aa9.34□□□□□ -0.91
CHD3-213ENST00000571249 PPM1EQ8WY54 764 aa9.34□□□□□ -0.91
CHD3-213ENST00000571249 NECTIN2Q92692 538 aa9.34□□□□□ -0.91
CHD3-213ENST00000571249 OPTNQ96CV9 577 aa9.34□□□□□ -0.91
CHD3-213ENST00000571249 CRISPLD2Q9H0B8 497 aa9.34□□□□□ -0.91
CHD3-213ENST00000571249 ELP3Q9H9T3 547 aa9.34□□□□□ -0.91
CHD3-213ENST00000571249 XIRP2A4UGR9 3374 aa9.34□□□□□ -0.91
CHD3-213ENST00000571249 MAP3K15Q6ZN16 1313 aa9.33□□□□□ -0.92
CHD3-213ENST00000571249 MYPNQ86TC9 1320 aa9.33□□□□□ -0.92
CHD3-213ENST00000571249 USP2O75604 605 aaPredicted RBP9.33□□□□□ -0.92
CHD3-213ENST00000571249 FMNL1O95466 1100 aaPredicted RBP9.33□□□□□ -0.92
CHD3-213ENST00000571249 PRKCZQ05513 592 aa9.33□□□□□ -0.92
CHD3-213ENST00000571249 CELF1Q92879 486 aaKnown RBP9.33□□□□□ -0.92
CHD3-213ENST00000571249 ZNF428Q96B54 188 aa9.33□□□□□ -0.92
CHD3-213ENST00000571249 ZC3H12CQ9C0D7 883 aaKnown RBP9.33□□□□□ -0.92
CHD3-213ENST00000571249 DEFB129Q9H1M3 183 aa9.33□□□□□ -0.92
CHD3-213ENST00000571249 ZBTB47Q9UFB7 747 aaPredicted RBP9.33□□□□□ -0.92
CHD3-213ENST00000571249 CPA4Q9UI42 421 aa9.33□□□□□ -0.92
CHD3-213ENST00000571249 GABRQQ9UN88 632 aa9.33□□□□□ -0.92
CHD3-213ENST00000571249 IBTKQ9P2D0 1353 aaPredicted RBP9.33□□□□□ -0.92
CHD3-213ENST00000571249 CACNA1BQ00975 2339 aa9.33□□□□□ -0.92
CHD3-213ENST00000571249 CHD8Q9HCK8 2581 aa9.32□□□□□ -0.92
CHD3-213ENST00000571249 G3V3G9 751 aa9.32□□□□□ -0.92
CHD3-213ENST00000571249 PPP1R12BO60237 982 aaPredicted RBP9.32□□□□□ -0.92
CHD3-213ENST00000571249 ELNP15502 786 aa9.32□□□□□ -0.92
CHD3-213ENST00000571249 DCAF8Q5TAQ9 597 aa9.32□□□□□ -0.92
CHD3-213ENST00000571249 PPP1R42Q7Z4L9 355 aa9.32□□□□□ -0.92
CHD3-213ENST00000571249 ATXN2LQ8WWM7 1075 aaKnown RBP9.32□□□□□ -0.92
CHD3-213ENST00000571249 EYA3Q99504 573 aa9.32□□□□□ -0.92
CHD3-213ENST00000571249 UTP14AQ9BVJ6 771 aaKnown RBP9.32□□□□□ -0.92
CHD3-213ENST00000571249 NUP98P52948 1817 aa9.32□□□□□ -0.92
CHD3-213ENST00000571249 CFAP54Q96N23 3096 aa9.32□□□□□ -0.92
CHD3-213ENST00000571249 LAMB1P07942 1786 aa9.32□□□□□ -0.92
CHD3-213ENST00000571249 WDFY4Q6ZS81 3184 aa9.31□□□□□ -0.92
CHD3-213ENST00000571249 USP34Q70CQ2 3546 aa9.31□□□□□ -0.92
CHD3-213ENST00000571249 FAM86C2PA6NEL3 165 aa9.31□□□□□ -0.92
CHD3-213ENST00000571249 INHAP05111 366 aa9.31□□□□□ -0.92
CHD3-213ENST00000571249 GRIN2CQ14957 1233 aa9.31□□□□□ -0.92
CHD3-213ENST00000571249 TMEM31Q5JXX7 168 aa9.31□□□□□ -0.92
CHD3-213ENST00000571249 NBPF12Q5TAG4 269 aaPredicted RBP9.31□□□□□ -0.92
CHD3-213ENST00000571249 C17orf99Q6UX52 265 aa9.31□□□□□ -0.92
CHD3-213ENST00000571249 C11orf16Q9NQ32 467 aa9.31□□□□□ -0.92
CHD3-213ENST00000571249 PAK6Q9NQU5 681 aaPredicted RBP9.31□□□□□ -0.92
CHD3-213ENST00000571249 COL4A1P02462 1669 aa9.31□□□□□ -0.92
CHD3-213ENST00000571249 TCF20Q9UGU0 1960 aaKnown RBP9.3□□□□□ -0.92
CHD3-213ENST00000571249 BAHCC1Q9P281 2608 aa9.3□□□□□ -0.92
CHD3-213ENST00000571249 USP17L3A6NCW0 530 aa9.3□□□□□ -0.92
CHD3-213ENST00000571249 USP17L4A6NCW7 530 aa9.3□□□□□ -0.92
CHD3-213ENST00000571249 GNAT3A8MTJ3 354 aa9.3□□□□□ -0.92
CHD3-213ENST00000571249 ADCY3O60266 1144 aa9.3□□□□□ -0.92
CHD3-213ENST00000571249 HOXD10P28358 340 aa9.3□□□□□ -0.92
CHD3-213ENST00000571249 USP17L1Q7RTZ2 530 aa9.3□□□□□ -0.92
CHD3-213ENST00000571249 APOBEC3FQ8IUX4 373 aaKnown RBP9.3□□□□□ -0.92
CHD3-213ENST00000571249 RRP7AQ9Y3A4 280 aaKnown RBP9.3□□□□□ -0.92
CHD3-213ENST00000571249 FAM205AQ6ZU69 1335 aa9.3□□□□□ -0.92
CHD3-213ENST00000571249 BTBD19C9JJ37 291 aa9.29□□□□□ -0.92
CHD3-213ENST00000571249 GTF2A2P52657 109 aa9.29□□□□□ -0.92
CHD3-213ENST00000571249 MRPS5P82675 430 aaKnown RBP9.29□□□□□ -0.92
CHD3-213ENST00000571249 SHHQ15465 462 aa9.29□□□□□ -0.92
CHD3-213ENST00000571249 KIF6Q6ZMV9 814 aa9.29□□□□□ -0.92
CHD3-213ENST00000571249 TMC4Q7Z404 712 aa9.29□□□□□ -0.92
CHD3-213ENST00000571249 MORC1Q86VD1 984 aa9.29□□□□□ -0.92
CHD3-213ENST00000571249 ANKRD13AQ8IZ07 590 aa9.29□□□□□ -0.92
CHD3-213ENST00000571249 SLAIN1Q8ND83 568 aa9.29□□□□□ -0.92
CHD3-213ENST00000571249 NBPF3Q9H094 633 aa9.29□□□□□ -0.92
CHD3-213ENST00000571249 EPG5Q9HCE0 2579 aa9.29□□□□□ -0.92
CHD3-213ENST00000571249 SIPA1L3O60292 1781 aaPredicted RBP9.28□□□□□ -0.92
CHD3-213ENST00000571249 UNCXA6NJT0 531 aa9.28□□□□□ -0.92
CHD3-213ENST00000571249 UFL1O94874 794 aa9.28□□□□□ -0.92
CHD3-213ENST00000571249 MYL6BP14649 208 aa9.28□□□□□ -0.92
CHD3-213ENST00000571249 IREB2P48200 963 aaKnown RBP9.28□□□□□ -0.92
CHD3-213ENST00000571249 C9orf50Q5SZB4 431 aa9.28□□□□□ -0.92
CHD3-213ENST00000571249 GIGYF2Q6Y7W6 1299 aaKnown RBP9.28□□□□□ -0.92
CHD3-213ENST00000571249 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.28□□□□□ -0.92
CHD3-213ENST00000571249 OGFOD1Q8N543 542 aa9.28□□□□□ -0.92
CHD3-213ENST00000571249 KHSRPQ92945 711 aaKnown RBP eCLIP9.28□□□□□ -0.92
CHD3-213ENST00000571249 C11orf49Q9H6J7 331 aa9.28□□□□□ -0.92
CHD3-213ENST00000571249 PCDHAC2Q9Y5I4 1007 aa9.28□□□□□ -0.92
CHD3-213ENST00000571249 PFASO15067 1338 aa9.28□□□□□ -0.92
CHD3-213ENST00000571249 LRRC37AA6NMS7 1700 aa9.28□□□□□ -0.92
CHD3-213ENST00000571249 LAMB2P55268 1798 aa9.27□□□□□ -0.92
CHD3-213ENST00000571249 DNAH12Q6ZR08 3092 aa9.27□□□□□ -0.93
CHD3-213ENST00000571249 PARP10Q53GL7 1025 aa9.27□□□□□ -0.93
CHD3-213ENST00000571249 POTEEQ6S8J3 1075 aa9.27□□□□□ -0.93
CHD3-213ENST00000571249 ZBED3Q96IU2 234 aaPredicted RBP9.27□□□□□ -0.93
CHD3-213ENST00000571249 THEGQ9P2T0 379 aa9.27□□□□□ -0.93
CHD3-213ENST00000571249 ADGRA2Q96PE1 1338 aa9.27□□□□□ -0.93
CHD3-213ENST00000571249 ZFHX4Q86UP3 3567 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms