RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ARGLU1Q9NWB6 273 aaPredicted RBP16.78■□□□□ 0.28
VPS35-210ENST00000568784 PDIA6Q15084 440 aa16.77■□□□□ 0.28
VPS35-210ENST00000568784 PROSER2Q86WR7 435 aaPredicted RBP16.77■□□□□ 0.28
VPS35-210ENST00000568784 ANKLE2Q86XL3 938 aa16.77■□□□□ 0.28
VPS35-210ENST00000568784 CPLX3Q8WVH0 158 aa16.77■□□□□ 0.28
VPS35-210ENST00000568784 FANCCQ00597 558 aa16.77■□□□□ 0.28
VPS35-210ENST00000568784 KCNG4Q8TDN1 519 aa16.77■□□□□ 0.28
VPS35-210ENST00000568784 ALG1Q9BT22 464 aa16.77■□□□□ 0.28
VPS35-210ENST00000568784 DDX41Q9UJV9 622 aaKnown RBP16.77■□□□□ 0.28
VPS35-210ENST00000568784 COL15A1P39059 1388 aa16.77■□□□□ 0.28
VPS35-210ENST00000568784 CCZ1BP86790 482 aa16.77■□□□□ 0.27
VPS35-210ENST00000568784 CCZ1P86791 482 aaPredicted RBP16.77■□□□□ 0.27
VPS35-210ENST00000568784 KLHL10Q6JEL2 608 aa16.77■□□□□ 0.27
VPS35-210ENST00000568784 TMCO3Q6UWJ1 677 aa16.77■□□□□ 0.27
VPS35-210ENST00000568784 IFNL2Q8IZJ0 200 aa16.77■□□□□ 0.27
VPS35-210ENST00000568784 MAST3O60307 1309 aa16.76■□□□□ 0.27
VPS35-210ENST00000568784 ARHGEF25Q86VW2 580 aa16.76■□□□□ 0.27
VPS35-210ENST00000568784 CWC25Q9NXE8 425 aaPredicted RBP16.76■□□□□ 0.27
VPS35-210ENST00000568784 CARMIL3Q8ND23 1372 aa16.76■□□□□ 0.27
VPS35-210ENST00000568784 M0R2C6 588 aa16.76■□□□□ 0.27
VPS35-210ENST00000568784 ADD1P35611 737 aaKnown RBP16.76■□□□□ 0.27
VPS35-210ENST00000568784 ZFP91Q96JP5 570 aaPredicted RBP16.76■□□□□ 0.27
VPS35-210ENST00000568784 GPTP24298 496 aa16.76■□□□□ 0.27
VPS35-210ENST00000568784 PNOCQ13519 176 aa16.76■□□□□ 0.27
VPS35-210ENST00000568784 MYSM1Q5VVJ2 828 aa16.76■□□□□ 0.27
VPS35-210ENST00000568784 CCDC150Q8NCX0 1101 aa16.76■□□□□ 0.27
VPS35-210ENST00000568784 CNNM3Q8NE01 707 aa16.76■□□□□ 0.27
VPS35-210ENST00000568784 CLIC6Q96NY7 704 aa16.76■□□□□ 0.27
VPS35-210ENST00000568784 EPC1Q9H2F5 836 aa16.76■□□□□ 0.27
VPS35-210ENST00000568784 PFKFB1P16118 471 aa16.75■□□□□ 0.27
VPS35-210ENST00000568784 GNG11P61952 73 aa16.75■□□□□ 0.27
VPS35-210ENST00000568784 ADALQ6DHV7 355 aa16.75■□□□□ 0.27
VPS35-210ENST00000568784 OSBP2Q969R2 916 aa16.75■□□□□ 0.27
VPS35-210ENST00000568784 PPP1R13BQ96KQ4 1090 aa16.75■□□□□ 0.27
VPS35-210ENST00000568784 NOL10Q9BSC4 688 aaKnown RBP16.75■□□□□ 0.27
VPS35-210ENST00000568784 CARD6Q9BX69 1037 aa16.75■□□□□ 0.27
VPS35-210ENST00000568784 KIF2AO00139 706 aaPredicted RBP16.75■□□□□ 0.27
VPS35-210ENST00000568784 LRRFIP1Q32MZ4 808 aaKnown RBP16.75■□□□□ 0.27
VPS35-210ENST00000568784 CHMP4CQ96CF2 233 aa16.75■□□□□ 0.27
VPS35-210ENST00000568784 NRXN3Q9Y4C0 1643 aa16.75■□□□□ 0.27
VPS35-210ENST00000568784 ZBTB22O15209 634 aa16.75■□□□□ 0.27
VPS35-210ENST00000568784 ADORA1P30542 326 aa16.75■□□□□ 0.27
VPS35-210ENST00000568784 ANO1Q5XXA6 986 aa16.74■□□□□ 0.27
VPS35-210ENST00000568784 RBM43Q6ZSC3 357 aaKnown RBP16.74■□□□□ 0.27
VPS35-210ENST00000568784 LRRN4CLQ8ND94 238 aa16.74■□□□□ 0.27
VPS35-210ENST00000568784 SMARCC2Q8TAQ2 1214 aa16.74■□□□□ 0.27
VPS35-210ENST00000568784 CCDC34Q96HJ3 373 aa16.74■□□□□ 0.27
VPS35-210ENST00000568784 KARSQ15046 597 aaKnown RBP16.74■□□□□ 0.27
VPS35-210ENST00000568784 LINC00301Q8NCQ3 95 aa16.74■□□□□ 0.27
VPS35-210ENST00000568784 NCOA7Q8NI08 942 aa16.74■□□□□ 0.27
VPS35-210ENST00000568784 KAT6BQ8WYB5 2073 aa16.74■□□□□ 0.27
VPS35-210ENST00000568784 CCDC66A2RUB6 948 aa16.74■□□□□ 0.27
VPS35-210ENST00000568784 PES1O00541 588 aaKnown RBP16.74■□□□□ 0.27
VPS35-210ENST00000568784 CDC25BP30305 580 aa16.74■□□□□ 0.27
VPS35-210ENST00000568784 METAP2P50579 478 aaKnown RBP eCLIP16.74■□□□□ 0.27
VPS35-210ENST00000568784 USPL1Q5W0Q7 1092 aa16.74■□□□□ 0.27
VPS35-210ENST00000568784 HELLSQ9NRZ9 838 aa16.74■□□□□ 0.27
VPS35-210ENST00000568784 IL15P40933 162 aaPredicted RBP16.74■□□□□ 0.27
VPS35-210ENST00000568784 SARM1Q6SZW1 724 aa16.74■□□□□ 0.27
VPS35-210ENST00000568784 CNNM1Q9NRU3 951 aa16.74■□□□□ 0.27
VPS35-210ENST00000568784 FGAP02671 866 aa16.73■□□□□ 0.27
VPS35-210ENST00000568784 BMS1Q14692 1282 aaKnown RBP16.73■□□□□ 0.27
VPS35-210ENST00000568784 ZNF827Q17R98 1081 aa16.73■□□□□ 0.27
VPS35-210ENST00000568784 TSGA10IPQ3SY00 556 aa16.73■□□□□ 0.27
VPS35-210ENST00000568784 METTL24Q5JXM2 366 aa16.73■□□□□ 0.27
VPS35-210ENST00000568784 FMR1NBQ8N0W7 255 aaPredicted RBP16.73■□□□□ 0.27
VPS35-210ENST00000568784 NUP133Q8WUM0 1156 aa16.73■□□□□ 0.27
VPS35-210ENST00000568784 ARMCX5Q6P1M9 558 aa16.73■□□□□ 0.27
VPS35-210ENST00000568784 JMYQ8N9B5 988 aa16.73■□□□□ 0.27
VPS35-210ENST00000568784 PXDNQ92626 1479 aa16.73■□□□□ 0.27
VPS35-210ENST00000568784 ZAP70P43403 619 aa16.73■□□□□ 0.27
VPS35-210ENST00000568784 E4F1Q66K89 784 aaPredicted RBP16.73■□□□□ 0.27
VPS35-210ENST00000568784 TRMT44Q8IYL2 757 aaKnown RBP16.73■□□□□ 0.27
VPS35-210ENST00000568784 FAM89AQ96GI7 184 aa16.73■□□□□ 0.27
VPS35-210ENST00000568784 EYA2O00167 538 aa16.72■□□□□ 0.27
VPS35-210ENST00000568784 SEC31AO94979 1220 aaKnown RBP16.72■□□□□ 0.27
VPS35-210ENST00000568784 DSCC1Q9BVC3 393 aa16.72■□□□□ 0.27
VPS35-210ENST00000568784 SLC26A6Q9BXS9 759 aa16.72■□□□□ 0.27
VPS35-210ENST00000568784 DIP2BQ9P265 1576 aa16.72■□□□□ 0.27
VPS35-210ENST00000568784 ZMYM1Q5SVZ6 1142 aa16.72■□□□□ 0.27
VPS35-210ENST00000568784 AKAP12Q02952 1782 aa16.72■□□□□ 0.27
VPS35-210ENST00000568784 FBXO18Q8NFZ0 1043 aa16.72■□□□□ 0.27
VPS35-210ENST00000568784 B4E1Z4 1266 aa16.71■□□□□ 0.27
VPS35-210ENST00000568784 FDPSP14324 419 aaKnown RBP16.71■□□□□ 0.27
VPS35-210ENST00000568784 SKIDA1Q1XH10 827 aa16.71■□□□□ 0.27
VPS35-210ENST00000568784 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.71■□□□□ 0.275e-8■■■□□ 19
VPS35-210ENST00000568784 PHKG2P15735 406 aa16.71■□□□□ 0.27
VPS35-210ENST00000568784 NLRP12P59046 1061 aa16.71■□□□□ 0.27
VPS35-210ENST00000568784 GABPB1Q06547 395 aaPredicted RBP16.71■□□□□ 0.27
VPS35-210ENST00000568784 SLC9C2Q5TAH2 1124 aa16.71■□□□□ 0.27
VPS35-210ENST00000568784 ENGASEQ8NFI3 743 aa16.71■□□□□ 0.27
VPS35-210ENST00000568784 RTEL1Q9NZ71 1219 aa16.71■□□□□ 0.27
VPS35-210ENST00000568784 DENND2AQ9ULE3 1009 aa16.71■□□□□ 0.27
VPS35-210ENST00000568784 KIF28PB7ZC32 967 aa16.71■□□□□ 0.26
VPS35-210ENST00000568784 RFX5P48382 616 aaPredicted RBP16.71■□□□□ 0.26
VPS35-210ENST00000568784 HELBQ8NG08 1087 aaPredicted RBP16.71■□□□□ 0.26
VPS35-210ENST00000568784 ZNF274Q96GC6 653 aaPredicted RBP16.71■□□□□ 0.26
VPS35-210ENST00000568784 ZKSCAN3Q9BRR0 538 aa16.71■□□□□ 0.26
VPS35-210ENST00000568784 ADKP55263 362 aaKnown RBP16.7■□□□□ 0.26
VPS35-210ENST00000568784 SAFBQ15424 915 aaKnown RBP eCLIP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms