RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 NLRP12P59046 1061 aa4.62□□□□□ -1.67
VPS35-208ENST00000568612 PIP4K2BP78356 416 aa4.62□□□□□ -1.67
VPS35-208ENST00000568612 FGD1P98174 961 aa4.62□□□□□ -1.67
VPS35-208ENST00000568612 ILDR2Q71H61 639 aa4.62□□□□□ -1.67
VPS35-208ENST00000568612 ZSCAN29Q8IWY8 852 aaPredicted RBP4.62□□□□□ -1.67
VPS35-208ENST00000568612 GALNT12Q8IXK2 581 aa4.62□□□□□ -1.67
VPS35-208ENST00000568612 KLHL23Q8NBE8 558 aa4.62□□□□□ -1.67
VPS35-208ENST00000568612 WFDC12Q8WWY7 111 aa4.62□□□□□ -1.67
VPS35-208ENST00000568612 CCDC74AQ96AQ1 378 aa4.62□□□□□ -1.67
VPS35-208ENST00000568612 KLHDC7BQ96G42 594 aa4.62□□□□□ -1.67
VPS35-208ENST00000568612 CSRNP1Q96S65 589 aa4.62□□□□□ -1.67
VPS35-208ENST00000568612 PCGF6Q9BYE7 350 aa4.62□□□□□ -1.67
VPS35-208ENST00000568612 AKTIPQ9H8T0 292 aa4.62□□□□□ -1.67
VPS35-208ENST00000568612 TPSG1Q9NRR2 321 aa4.62□□□□□ -1.67
VPS35-208ENST00000568612 A0A096LPE4 126 aa4.61□□□□□ -1.67
VPS35-208ENST00000568612 A0A1W2PPZ6 126 aa4.61□□□□□ -1.67
VPS35-208ENST00000568612 K7ELQ4 463 aaPredicted RBP4.61□□□□□ -1.67
VPS35-208ENST00000568612 NOS3P29474 1203 aa4.61□□□□□ -1.67
VPS35-208ENST00000568612 MAPK8P45983 427 aa4.61□□□□□ -1.67
VPS35-208ENST00000568612 PLCB3Q01970 1234 aa4.61□□□□□ -1.67
VPS35-208ENST00000568612 DUOXA2Q1HG44 320 aa4.61□□□□□ -1.67
VPS35-208ENST00000568612 FOXD4L6Q3SYB3 417 aaPredicted RBP4.61□□□□□ -1.67
VPS35-208ENST00000568612 FOXD4L3Q6VB84 417 aaPredicted RBP4.61□□□□□ -1.67
VPS35-208ENST00000568612 BHLHE41Q9C0J9 482 aaPredicted RBP4.61□□□□□ -1.67
VPS35-208ENST00000568612 DNAJC25Q9H1X3 360 aa4.61□□□□□ -1.67
VPS35-208ENST00000568612 SEMA6BQ9H3T3 888 aa4.61□□□□□ -1.67
VPS35-208ENST00000568612 NLRP2Q9NX02 1062 aa4.61□□□□□ -1.67
VPS35-208ENST00000568612 SOX13Q9UN79 622 aa4.61□□□□□ -1.67
VPS35-208ENST00000568612 PNMA6FA0A0J9YX94 578 aa4.6□□□□□ -1.67
VPS35-208ENST00000568612 F8W735 103 aaPredicted RBP4.6□□□□□ -1.67
VPS35-208ENST00000568612 WISP1O95388 367 aa4.6□□□□□ -1.67
VPS35-208ENST00000568612 GSTM4Q03013 218 aa4.6□□□□□ -1.67
VPS35-208ENST00000568612 C19orf57Q0VDD7 668 aa4.6□□□□□ -1.67
VPS35-208ENST00000568612 SUZ12Q15022 739 aaKnown RBP4.6□□□□□ -1.67
VPS35-208ENST00000568612 SPRED3Q2MJR0 410 aa4.6□□□□□ -1.67
VPS35-208ENST00000568612 HGSNATQ68CP4 663 aa4.6□□□□□ -1.67
VPS35-208ENST00000568612 VN1R5Q7Z5H4 357 aa4.6□□□□□ -1.67
VPS35-208ENST00000568612 NPM2Q86SE8 214 aaKnown RBP4.6□□□□□ -1.67
VPS35-208ENST00000568612 CCNJLQ8IV13 435 aa4.6□□□□□ -1.67
VPS35-208ENST00000568612 EPS8L3Q8TE67 593 aaKnown RBP4.6□□□□□ -1.67
VPS35-208ENST00000568612 UBASH3BQ8TF42 649 aa4.6□□□□□ -1.67
VPS35-208ENST00000568612 WNT8BQ93098 351 aa4.6□□□□□ -1.67
VPS35-208ENST00000568612 USP26Q9BXU7 913 aa4.6□□□□□ -1.67
VPS35-208ENST00000568612 OSGEPQ9NPF4 335 aa4.6□□□□□ -1.67
VPS35-208ENST00000568612 KCNK4Q9NYG8 393 aa4.6□□□□□ -1.67
VPS35-208ENST00000568612 SOX1O00570 391 aaPredicted RBP4.59□□□□□ -1.67
VPS35-208ENST00000568612 IGHA2P01877 340 aa4.59□□□□□ -1.67
VPS35-208ENST00000568612 GRIA4P48058 902 aa4.59□□□□□ -1.67
VPS35-208ENST00000568612 KIAA0319Q5VV43 1072 aa4.59□□□□□ -1.67
VPS35-208ENST00000568612 PI16Q6UXB8 463 aa4.59□□□□□ -1.67
VPS35-208ENST00000568612 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.59□□□□□ -1.67
VPS35-208ENST00000568612 FOXD4L4Q8WXT5 416 aaPredicted RBP4.59□□□□□ -1.67
VPS35-208ENST00000568612 ALKBH8Q96BT7 664 aaKnown RBP4.59□□□□□ -1.67
VPS35-208ENST00000568612 CCDC136Q96JN2 1154 aa4.59□□□□□ -1.67
VPS35-208ENST00000568612 MEGF10Q96KG7 1140 aa4.59□□□□□ -1.67
VPS35-208ENST00000568612 TCF12Q99081 682 aa4.59□□□□□ -1.67
VPS35-208ENST00000568612 TREHO43280 583 aa4.58□□□□□ -1.68
VPS35-208ENST00000568612 SART1O43290 800 aaKnown RBP4.58□□□□□ -1.68
VPS35-208ENST00000568612 ADAM23O75077 832 aa4.58□□□□□ -1.68
VPS35-208ENST00000568612 ADAM11O75078 769 aa4.58□□□□□ -1.68
VPS35-208ENST00000568612 ESRRAP11474 423 aaPredicted RBP4.58□□□□□ -1.68
VPS35-208ENST00000568612 PCDH1Q08174 1060 aa4.58□□□□□ -1.68
VPS35-208ENST00000568612 TMEM130Q8N3G9 435 aa4.58□□□□□ -1.68
VPS35-208ENST00000568612 RUSC1Q9BVN2 902 aa4.58□□□□□ -1.68
VPS35-208ENST00000568612 CLEC4MQ9H2X3 399 aaPredicted RBP4.58□□□□□ -1.68
VPS35-208ENST00000568612 PPP4R2Q9NY27 417 aa4.58□□□□□ -1.68
VPS35-208ENST00000568612 TRAK1Q9UPV9 953 aa4.58□□□□□ -1.68
VPS35-208ENST00000568612 ZNF157P51786 506 aaPredicted RBP4.57□□□□□ -1.68
VPS35-208ENST00000568612 FCGRTP55899 365 aa4.57□□□□□ -1.68
VPS35-208ENST00000568612 ATP2B2Q01814 1243 aa4.57□□□□□ -1.68
VPS35-208ENST00000568612 GRM2Q14416 872 aa4.57□□□□□ -1.68
VPS35-208ENST00000568612 DSC3Q14574 896 aa4.57□□□□□ -1.68
VPS35-208ENST00000568612 RSPO4Q2I0M5 234 aaPredicted RBP4.57□□□□□ -1.68
VPS35-208ENST00000568612 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.57□□□□□ -1.68
VPS35-208ENST00000568612 FDX2Q6P4F2 183 aa4.57□□□□□ -1.68
VPS35-208ENST00000568612 DTHD1Q6ZMT9 781 aa4.57□□□□□ -1.68
VPS35-208ENST00000568612 KIAA1211Q6ZU35 1233 aa4.57□□□□□ -1.68
VPS35-208ENST00000568612 ASB16Q96NS5 453 aa4.57□□□□□ -1.68
VPS35-208ENST00000568612 CEP41Q9BYV8 373 aa4.57□□□□□ -1.68
VPS35-208ENST00000568612 TMEM238LA0A1B0GVL6 79 aa4.56□□□□□ -1.68
VPS35-208ENST00000568612 DYRK3O43781 588 aa4.56□□□□□ -1.68
VPS35-208ENST00000568612 ENOX2Q16206 610 aaKnown RBP4.56□□□□□ -1.68
VPS35-208ENST00000568612 ZNF423Q2M1K9 1284 aa4.56□□□□□ -1.68
VPS35-208ENST00000568612 GLIPR1L2Q4G1C9 344 aa4.56□□□□□ -1.68
VPS35-208ENST00000568612 SND1Q7KZF4 910 aaKnown RBP eCLIP4.56□□□□□ -1.68
VPS35-208ENST00000568612 DDX54Q8TDD1 881 aaKnown RBP4.56□□□□□ -1.68
VPS35-208ENST00000568612 UTP4Q969X6 686 aaKnown RBP4.56□□□□□ -1.68
VPS35-208ENST00000568612 SETDB2Q96T68 719 aa4.56□□□□□ -1.68
VPS35-208ENST00000568612 BCO2Q9BYV7 579 aa4.56□□□□□ -1.68
VPS35-208ENST00000568612 RNF208Q9H0X6 261 aa4.56□□□□□ -1.68
VPS35-208ENST00000568612 ZNF576Q9H609 170 aa4.56□□□□□ -1.68
VPS35-208ENST00000568612 ABCB6Q9NP58 842 aa4.56□□□□□ -1.68
VPS35-208ENST00000568612 GPN3Q9UHW5 284 aaPredicted RBP4.56□□□□□ -1.68
VPS35-208ENST00000568612 AKAP2Q9Y2D5 859 aa4.56□□□□□ -1.68
VPS35-208ENST00000568612 LOC105371045A0A1W2PR82 267 aa4.55□□□□□ -1.68
VPS35-208ENST00000568612 TM4SF5O14894 197 aa4.55□□□□□ -1.68
VPS35-208ENST00000568612 GAS2O43903 313 aaKnown RBP4.55□□□□□ -1.68
VPS35-208ENST00000568612 NKAPLQ5M9Q1 402 aa4.55□□□□□ -1.68
VPS35-208ENST00000568612 NUTM2GQ5VZR2 741 aa4.55□□□□□ -1.68
VPS35-208ENST00000568612 NXPE4Q6UWF7 544 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms